DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and RCC1L

DIOPT Version :9

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:NP_110425.2 Gene:RCC1L / 81554 HGNCID:14948 Length:464 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 RCC1 6..55 CDD:278826
RCC1 59..110 CDD:278826
RCC1 114..163 CDD:278826
RCC1 167..218 CDD:278826
RCC1 221..270 CDD:278826
RCC1 273..322 CDD:278826
RCC1_2 309..339 CDD:290274
RCC1 327..390 CDD:278826
HECTc 715..1060 CDD:238033
HECTc 739..1059 CDD:214523
RCC1LNP_110425.2 RCC1 1. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 58..124
RCC1 2. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 128..191
RCC1 130..189 CDD:278826
RCC1_2 176..205 CDD:290274
RCC1 3. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 193..247
RCC1 195..245 CDD:278826
RCC1_2 232..261 CDD:290274
RCC1 4. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 248..300
RCC1 248..298 CDD:278826
RCC1 301..351 CDD:278826
RCC1 5. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 302..353
RCC1 6. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 354..411
RCC1_2 396..425 CDD:290274
RCC1 7. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 412..461
RCC1 412..455 CDD:278826
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.920

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