DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and ube3a

DIOPT Version :9

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:NP_001007319.1 Gene:ube3a / 792398 ZFINID:ZDB-GENE-041114-190 Length:857 Species:Danio rerio


Alignment Length:782 Identity:220/782 - (28%)
Similarity:374/782 - (47%) Gaps:139/782 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   399 VPP--EDFRNYN-----PKSQILTLTAEV------------------------------TKQCAQ 426
            :||  ||||:.|     ...:||::.:|.                              ||:..:
Zfish    97 LPPTREDFRDLNFLTEDKVYEILSICSETEDYSPLIRVIGRVFSSAESLVQSFRKAKQHTKEELK 161

  Fly   427 CKQGLQSDMD-------LLSSIELIFRSQACWNGSFLLDHDRHFGCSVRNHG-----LDLKAAQL 479
            ..|....|.|       ..||..:....:|..:..   |...|...:|:..|     :|:.|.:.
Zfish   162 SLQAKDEDKDEDEKETASGSSTAMEVEPEASASSG---DGSSHGENNVQKLGPVEVSVDIDAVRR 223

  Fly   480 AFDNLRAVENESIRQVIWDNITKELVGSLVCS-------PADVESMRLYLLLPLYHEFVNSKHYK 537
            .:|  |.:.||.| :..:.|....|..::.|.       .||...:.::::: :.:..::|..|.
Zfish   224 VYD--RLLSNEKI-EAAFLNALVYLSPNVECDLTYHNVYAADPNYLNVFIIV-MENSNLHSPEYL 284

  Fly   538 SLQVP-FANAIFKLAENPRKVLNK----WLAQTPAEYFEHLVQNFLHVVIH-IISFKM------- 589
            .:.:| |..|:.||   |...|.|    | :|...:....||:.|..::.: :||.:.       
Zfish   285 EIALPQFCKAMSKL---PLPALAKLARLW-SQYGVDQIRRLVETFQQLITYTVISNEFSSDNLVN 345

  Fly   590 ---GLAAAS-----------------------------PSA-----------ERRQQLLPYNTEL 611
               |:.||:                             |.:           |||.:..|....|
Zfish   346 EDDGVVAATKCLKIVYYANVLGGDLDTDHNEEDDDEPIPESSELTLQELLGEERRNKKGPRVDPL 410

  Fly   612 EIILKLMKTLCQINNERHDRLNYQIFYWPDLSDYADVQQEYVKWIMADTARDFNICNYSFIFDQS 676
            |..:.:..:.|     |...:.::.|....|::..::.::|. :...:|...|:.....||.:..
Zfish   411 ETEMGIRASDC-----RKPLIPFEEFINEPLNEVLEMDKDYT-FFKVETESKFSFMTCPFILNAV 469

  Fly   677 AKTALLQADQALQMHSAMANAATMAFSFFNYGMPISQFIVLNVTRENLVQDSLRELQHYSQ---S 738
            .|...|..|..::|:|  ....|..:|... |..::.::.|.|.|::::.|:|..|:..:.   :
Zfish   470 TKNLGLYYDNRIRMYS--ERRITALYSLVQ-GQQLNPYLRLKVRRDHIIDDALVRLEMIAMENPA 531

  Fly   739 DLKKPLKIKFHGEEAEDAGGVRKEFFMLLLKDLLDPKYGMFKEYEQSRLLWFADLTFETENMYFL 803
            ||||.|.::|.||:..|.|||.||||.|:::::.:|..|||...|.::|.||...:||.|..:.|
Zfish   532 DLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKLFWFNPSSFENEGQFTL 596

  Fly   804 IGVLCGLAIYNFTIINLPFPLALFKKLLGKPVDLSDLRQLSPPEANSMQSLLDYQGDDFKEVFDL 868
            ||::.||||||..|:::.||:.:::||:||.....||....|....|::.|::|:| :.:|...:
Zfish   597 IGIVLGLAIYNNCILDVHFPMVIYRKLMGKKGTFRDLADSHPVLFQSLKDLMEYEG-NVEEDMMI 660

  Fly   869 TFEISR-DVFGEAETKCLKPNGNEIAVTLENRQEFVDLYVDFVFNKSVELHYNAFHKGFMKVCSG 932
            ||:||: |:||......||.:|::|.||.|||::||.||.:::.|||||..:.||.:||..|.:.
Zfish   661 TFQISQTDLFGNPLMYDLKESGDKIPVTNENRKDFVALYAEYMLNKSVEKQFKAFRRGFHMVTNE 725

  Fly   933 RVI-HIFQPEELMAVVVGNEDYDWQALQDNCEYREGYTSVDDTIKWFWEVIHDMSEAEKKSFLLF 996
            ..: ::|:|||:..::.|:.:.|:|||:::.||..||......|:.|||.:|...:.:|:.||.|
Zfish   726 SPLKYLFRPEEIELLICGSRNLDFQALEESTEYDGGYNKDSRIIRDFWETVHSFEQEKKRLFLQF 790

  Fly   997 LTGSDRIPIQGMKALKLTIQPT-PDERFLPVAHTCFNLLDLPRYKTKERLKYKLLQAIQQTQGFS 1060
            .||:||.|:.|:..||:.|... ||...||.:|||||:|.||.|.|.|:||.:||:||...:||.
Zfish   791 TTGTDRAPVGGLGKLKMIIAKNGPDSDRLPTSHTCFNVLLLPEYSTVEKLKERLLKAITYAKGFG 855

  Fly  1061 LV 1062
            ::
Zfish   856 ML 857

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 RCC1 6..55 CDD:278826
RCC1 59..110 CDD:278826
RCC1 114..163 CDD:278826
RCC1 167..218 CDD:278826
RCC1 221..270 CDD:278826
RCC1 273..322 CDD:278826
RCC1_2 309..339 CDD:290274
RCC1 327..390 CDD:278826
HECTc 715..1060 CDD:238033 141/350 (40%)
HECTc 739..1059 CDD:214523 134/322 (42%)
ube3aNP_001007319.1 AZUL 6..60 CDD:293166
HECTc 505..855 CDD:238033 141/350 (40%)
HECTc 532..854 CDD:214523 134/322 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276447at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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