DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and Smurf2

DIOPT Version :10

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:NP_079757.2 Gene:Smurf2 / 66313 MGIID:1913563 Length:748 Species:Mus musculus


Alignment Length:431 Identity:139/431 - (32%)
Similarity:219/431 - (50%) Gaps:45/431 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   647 DVQQEYVKWIMADTARDFNICNYSFIFDQSAKTALLQADQALQMHSAMANAATMAFSFFNYGMPI 711
            |.||:.|..:..|......:..|.  .|...|..:|:.:.:.|                   .|.
Mouse   346 DQQQQQVVPLCPDDTECLTVPRYK--RDLVQKLKILRQELSQQ-------------------QPQ 389

  Fly   712 SQFIVLNVTRENLVQDSLRELQHYSQSDLKKPLKIKFHGEEAEDAGGVRKEFFMLLLKDLLDPKY 776
            :....:.|:||.:.::|.|::......||.|.|.|||.|||..|.|||.:|:..||..::|:|.|
Mouse   390 AGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYY 454

  Fly   777 GMFKEYEQSRLLWF---ADLTFETENM-YF-LIGVLCGLAIYNFTIINLPFPLALFKKLLGKPVD 836
            |:| :|.:..:...   .|.....|:: || .:|.:.|:|:::...|:..|.|..:|:||||.:.
Mouse   455 GLF-QYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSIT 518

  Fly   837 LSDLRQLSPPEANSMQSLLDYQGDDFKEVFDLTFEISRDVFGEAETKCLKPNGNEIAVTLENRQE 901
            |.|:..:.|...||:..:|:   :|...|.|.||.:..:.:||.....|||||..|.||.||::|
Mouse   519 LDDMELVDPDLHNSLVWILE---NDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVTEENKKE 580

  Fly   902 FVDLYVDFVFNKSVELHYNAFHKGFMKVCSGRVIHIFQPEELMAVV--VGNEDY-DWQALQDNCE 963
            :|.|||::.|.:.:|..:.|..|||.:|....::..|..:||..::  :|..|. ||:.   |..
Mouse   581 YVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVSDWKV---NTR 642

  Fly   964 YREGYTSVDDTIKWFWEVIHDMSEAEKKSFLLFLTGSDRIPIQGMKALK-------LTI-QPTPD 1020
            .:. .|...:.:||||:.:....|..:...|.|:|||.|:|:||.|||:       .|| |....
Mouse   643 LKH-CTPDSNVVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDAC 706

  Fly  1021 ERFLPVAHTCFNLLDLPRYKTKERLKYKLLQAIQQTQGFSL 1061
            ...||.||||||.:|:|.|::.|:|..|||.||::|.||::
Mouse   707 TNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAV 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 ATS1 7..352 CDD:444065
RCC1 327..390 CDD:395335
HECTc 715..1060 CDD:238033 127/360 (35%)
Smurf2NP_079757.2 C2_Smurf-like 13..137 CDD:176028
HUL4 <159..745 CDD:227354 137/427 (32%)
Blue background indicates that the domain is not in the aligned region.

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