DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and SMURF2

DIOPT Version :9

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:NP_073576.1 Gene:SMURF2 / 64750 HGNCID:16809 Length:748 Species:Homo sapiens


Alignment Length:431 Identity:138/431 - (32%)
Similarity:218/431 - (50%) Gaps:45/431 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   647 DVQQEYVKWIMADTARDFNICNYSFIFDQSAKTALLQADQALQMHSAMANAATMAFSFFNYGMPI 711
            |.||:.|..:..|......:..|.  .|...|..:|:.:.:.|                   .|.
Human   346 DQQQQQVVSLCPDDTECLTVPRYK--RDLVQKLKILRQELSQQ-------------------QPQ 389

  Fly   712 SQFIVLNVTRENLVQDSLRELQHYSQSDLKKPLKIKFHGEEAEDAGGVRKEFFMLLLKDLLDPKY 776
            :....:.|:||.:.::|.|::......||.|.|.|||.|||..|.|||.:|:..||..::|:|.|
Human   390 AGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYY 454

  Fly   777 GMFKEYEQSRLLWF---ADLTFETENM-YF-LIGVLCGLAIYNFTIINLPFPLALFKKLLGKPVD 836
            |:| :|.:..:...   .|.....|:: || .:|.:.|:|:::...|:..|.|..:|:||||.:.
Human   455 GLF-QYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSIT 518

  Fly   837 LSDLRQLSPPEANSMQSLLDYQGDDFKEVFDLTFEISRDVFGEAETKCLKPNGNEIAVTLENRQE 901
            |.|:..:.|...||:..:|:   :|...|.|.||.:..:.:||.....|||||..|.|..||::|
Human   519 LDDMELVDPDLHNSLVWILE---NDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKE 580

  Fly   902 FVDLYVDFVFNKSVELHYNAFHKGFMKVCSGRVIHIFQPEELMAVV--VGNEDY-DWQALQDNCE 963
            :|.|||::.|.:.:|..:.|..|||.:|....::..|..:||..::  :|..|. ||:.   |..
Human   581 YVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKV---NTR 642

  Fly   964 YREGYTSVDDTIKWFWEVIHDMSEAEKKSFLLFLTGSDRIPIQGMKALK-------LTI-QPTPD 1020
            .:. .|...:.:||||:.:....|..:...|.|:|||.|:|:||.|||:       .|| |....
Human   643 LKH-CTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDAC 706

  Fly  1021 ERFLPVAHTCFNLLDLPRYKTKERLKYKLLQAIQQTQGFSL 1061
            ...||.||||||.:|:|.|::.|:|..|||.||::|.||::
Human   707 TNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAV 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 RCC1 6..55 CDD:278826
RCC1 59..110 CDD:278826
RCC1 114..163 CDD:278826
RCC1 167..218 CDD:278826
RCC1 221..270 CDD:278826
RCC1 273..322 CDD:278826
RCC1_2 309..339 CDD:290274
RCC1 327..390 CDD:278826
HECTc 715..1060 CDD:238033 126/360 (35%)
HECTc 739..1059 CDD:214523 120/335 (36%)
SMURF2NP_073576.1 C2_Smurf-like 13..137 CDD:176028
HUL4 <159..745 CDD:227354 136/427 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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