DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and hectd2

DIOPT Version :9

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:XP_009304826.1 Gene:hectd2 / 562999 ZFINID:ZDB-GENE-100405-3 Length:756 Species:Danio rerio


Alignment Length:703 Identity:210/703 - (29%)
Similarity:337/703 - (47%) Gaps:72/703 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   396 VDKVPPEDFRNY--NPKSQILTLTAEVTKQCAQCKQGLQSDMDLLSSIEL-IFRSQACWNGSFLL 457
            :|.:|||....:  .|...|.|.||:..:...: :..:..|...:....| .|.|....||:|..
Zfish    88 IDVLPPEVKARFVSEPIIPIRTKTAKEFQDDVE-RATISGDWKHVHDFYLTTFDSFLELNGAFKK 151

  Fly   458 DHDRHFGCSVRNHGLDLKAAQLAFDNLRAVENESIRQVIWDNITKELVGSLV---CSPADVESMR 519
            :.:..|. ::.:.|:::|...:.:|.|.....::.:.|:     |.::.||:   ..|...:.:|
Zfish   152 EANAPFN-TIEDSGINIKFVNIVYDALLHTPADTQKSVL-----KGIINSLLREWKGPRTKDDLR 210

  Fly   520 LYLLLPLYHEFVNSKHYKS-----LQVPFANAIFKLAENPRKVLNKWLAQTPAEYFEHLVQNF-L 578
            .|.:|      |.:..|.|     :.......|..|||.....|..|..:.|.:.|:.||:.. |
Zfish   211 AYFVL------VQNPQYTSPATYVIYAHLLRQIAALAEADHHFLMHWFKKLPQKRFKQLVERLQL 269

  Fly   579 HVVIHIISFKMGLAAASPSAERRQQLLPYNTELEIILKLMKTLCQINNERHDRLNYQIFYWPDLS 643
            .:...:...|   ....|...:....:|..|:   :|.|:.....|::.  ..:.:..||...| 
Zfish   270 FITTRLFPAK---PEELPPMAKCSWWIPSATK---VLSLLNAANSISSA--PIIPFTDFYNLTL- 325

  Fly   644 DYADVQQEYVKWIMADTARDFNICNYSFIFDQSAKTALLQADQALQMHS----------AMANAA 698
            |:.|..::|..|.:...:..|..|.:.||.....|.|::|.|...||.|          :.....
Zfish   326 DHIDFMEDYHTWQVHGNSNRFTFCQFPFILSTVVKKAIIQRDSEQQMISMARQTLVDKVSRRQRV 390

  Fly   699 TMAFSFFNYGMPISQFIVLNVTRENLVQDSLRELQHYSQSDLKKPLKIKFHGEEAEDAGGVRKEF 763
            .|:..|.|          :.|.|..||.|||.||.. .::||||.||:.|.||...|.||:.||:
Zfish   391 DMSLLFLN----------IKVRRLQLVSDSLDELSR-KRADLKKKLKVTFVGEAGLDMGGLTKEW 444

  Fly   764 FMLLLKDLLDPKYGMFKEYEQSRLLWFADLTFETENMYFLIGVLCGLAIYNFTIINLPFPLALFK 828
            |:||::.:....||||...::|:..||:....:..:.:.|:|.|.|||:||...:::.||..::|
Zfish   445 FLLLIRQIFHTDYGMFTYVKESQCYWFSSWKCDNYSEFRLVGALMGLAVYNSITLDIRFPPCVYK 509

  Fly   829 KLLGKPV--------------DLSDLRQLSPPEANSMQSLLDYQGDDFKEVFDLTFEISRDVFGE 879
            |||..|:              .|.||:|:.|..|:.:..||.|:| :.:|.|..||::.::..|.
Zfish   510 KLLTPPIVPCDLDTPVGMATLTLDDLQQIMPDLAHGLGELLSYEG-NVEEDFYTTFQVFQEELGV 573

  Fly   880 AETKCLKPNGNEIAVTLENRQEFVDLYVDFVFNKSVELHYNAFHKGFMKVCSGRVIHIFQPEELM 944
            .:...|||.|::|.||..||:|:|.||:||:.|||:...:.||:.||..||:...:.:.:|||:.
Zfish   574 VKAYNLKPGGDKIPVTNLNRKEYVQLYIDFLLNKSIYRQFAAFYHGFHSVCASNALMLLRPEEVE 638

  Fly   945 AVVVGNEDYDWQALQDNCEYREGYTSVDDTIKWFWEVIHDMSEAEKKSFLLFLTGSDRIPIQGMK 1009
            .:|.|:.:.|..:||...:| |||:..|.||:.||:|:.......:|..|.|.|||||:|:.||.
Zfish   639 ILVCGSPNLDMGSLQRVVQY-EGYSKTDPTIRAFWDVVLAFPLELQKKLLHFTTGSDRVPVGGMA 702

  Fly  1010 ALKLTIQPTP-DERFLPVAHTCFNLLDLPRYKTKERLKYKLLQAIQQTQGFSL 1061
            .|...|.... ...:|||:|||||.:.||.||:|:.|:.||..||...:||.|
Zfish   703 DLNFKISKIDVSTDWLPVSHTCFNQICLPPYKSKKELRQKLTIAISNAEGFGL 755

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 RCC1 6..55 CDD:278826
RCC1 59..110 CDD:278826
RCC1 114..163 CDD:278826
RCC1 167..218 CDD:278826
RCC1 221..270 CDD:278826
RCC1 273..322 CDD:278826
RCC1_2 309..339 CDD:290274
RCC1 327..390 CDD:278826
HECTc 715..1060 CDD:238033 137/359 (38%)
HECTc 739..1059 CDD:214523 127/334 (38%)
hectd2XP_009304826.1 HECTc 397..754 CDD:238033 138/369 (37%)
HECTc 420..753 CDD:214523 127/334 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276447at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R774
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.850

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