DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and herc5.1

DIOPT Version :9

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:XP_017211386.1 Gene:herc5.1 / 559981 ZFINID:ZDB-GENE-090311-56 Length:884 Species:Danio rerio


Alignment Length:961 Identity:320/961 - (33%)
Similarity:480/961 - (49%) Gaps:126/961 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 VRQLVTKTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNSPNDLTHCNYPLRLTTLLGIPLA 206
            ::.|..:.|:|||||:.||:|||:.|:|:.||.|..||||:......|..  |..|.:|.|||:|
Zfish     4 LKGLENRQVIQIACGDQHSMALTNDGQLFVWGENALGQLGLRKEQAGTQS--PRHLQSLCGIPVA 66

  Fly   207 AIACGGNHSFLISKSGAVFGWGRNNCGQLGLNDETNRSYPTQLKTLRTLGVRFVACGDEFSVFLT 271
            .|:.||||||::|.||.|||||.|:.|||||.|.|:|..||.:.:|:...:..::||.|.:..|.
Zfish    67 QISAGGNHSFVLSLSGVVFGWGGNSAGQLGLGDTTDRFVPTVVNSLKRKKIVSISCGGEHTAALA 131

  Fly   272 NEGGVFTCGAGAYGQLGHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGS 336
            ..|.|||.|:|.:|||||....:|..||:|.||.||.::||.||..|||....|...:|:||.|.
Zfish   132 KGGTVFTFGSGGFGQLGHNSFKDEHHPRLVAELWGSKVSQVTCGRNHTLVSTASPKLIYSFGCGM 196

  Fly   337 SGQLGTRSTKSLMLPQVVIGPWVSPSGSALLQSNDSQVSLVIRQIFSGGDQSIVTTTLFVDKVPP 401
            .||||........:|..|..|         .:.||   ...|:::.:|.:.|.   .|:..::..
Zfish   197 QGQLGNGEQVKQSVPLPVDQP---------TEYND---EYTIQKLVAGENHSF---ALYFKELGN 246

  Fly   402 EDFRNYNPKSQILTLTAEVTKQCAQCKQGLQSDMDLLSSIELIFRSQACWNGSFL-LDHDRHFGC 465
            |  .|.:|...|:|....:.:||...|...::..||    :.:|.|.|..||||| ..||.|:..
Zfish   247 E--ANPDPTRGIMTFDNGMIEQCECGKDPRKAIKDL----KKVFSSAASLNGSFLKTRHDGHYQT 305

  Fly   466 SVRNHGLDLKAAQLAFDNLRAVENESIRQVIWDNITKELVGSLVCSPADVESMRLYLLLPLYHEF 530
            |....|||....:.:...|.  .||.:...:...:.:.|:.:|..:|...||:|||:|||.....
Zfish   306 SEEYCGLDFGLVESSIATLS--RNERLISTVLKVLQESLLPTLNPNPTGEESLRLYILLPELISH 368

  Fly   531 VNSKHYKSLQVPFANAIFKLAENPRKVLNKWLAQTPAEYFEHLVQNFL--------HVVI----- 582
            :.|:....|....|:.|..|:....:||..:.::.|.::.::||:.|.        .:::     
Zfish   369 LKSEQKAELTEALASKILNLSPAALRVLEIYWSKLPDDWLKNLVKLFKKASAKFFGRIIVENVNN 433

  Fly   583 ----HIISFKMGLAAASPSAERRQQLLPYNTELEIILKLMKTLCQINNERHDRLNYQIFYWPDLS 643
                |::.|                       :||:.::.:..|..|  |:.:..|.|.:  :::
Zfish   434 VAKTHMLKF-----------------------VEILQRVYQVCCSAN--RNIKKRYFIIH--EVN 471

  Fly   644 DYADVQQEYVKWIMADTARD---FNICNYSFIFDQSAKTALLQADQALQMHS--AMANAATMAF- 702
            :..||.|.    :.||...:   ||:..                    |:|:  |..||....| 
Zfish   472 NLLDVLQT----MNADVNNNWPWFNLTG--------------------QIHALEAQRNAYEETFR 512

  Fly   703 ---SF---FNYGMPISQF--------IVLNVTRENLVQDSLRELQHYSQSDLK-KPLKIKFHGEE 752
               ||   ||.....|..        ..|.|.|..|::|.|..|...:|..|: |.|.|.|....
Zfish   513 KLTSFPCIFNLEAKCSYMRNRVWKGRFELTVRRTALLEDCLCLLNPGTQQHLRDKWLSILFTENV 577

  Fly   753 AEDAGGVRKEFFMLLLKDLLDPKYGMFKEYEQSRLLWF-ADLTFETENMYFLIGVLCGLAIYNFT 816
            ::.....:::||:.:.|:|.||...:|...:...::|| |.||.| :..|||.|:|||||..|.:
Zfish   578 SKRTDVHKRDFFLNVFKELCDPASQLFMYNDNETMIWFPAKLTVE-KKKYFLFGILCGLAFNNSS 641

  Fly   817 IINLPFPLALFKKLLGKPVDLSDLRQLSPPEANSMQSLLDYQGDDFKE-VFDLTFEISRDVFGEA 880
            ::|||||||||||||.....|.|..:.:|....|:|.:|:|..|..:| ...||.     ::..:
Zfish   642 VVNLPFPLALFKKLLNIKPSLEDFIEFNPVHGRSLQYILEYSNDVLEESSLPLTI-----IWSGS 701

  Fly   881 ETKCLKPNGNEIAVTLENRQEFVDLYVDFVFNKSVELHYNAFHKGFMKVCSGRVIHIFQPEELMA 945
            |.. |.|...|..:|..||.:|||.|||.:||:||:..:..|.:||.:.|..|::.:|:||||..
Zfish   702 ELD-LDPAEPEQHITTSNRTKFVDEYVDHIFNQSVKEAFEEFRRGFFRGCEKRLVEMFEPEELRG 765

  Fly   946 VVVGNEDYDWQALQDNCEYREGYTSVDDTIKWFWEVIHDMSEAEKKSFLLFLTGSDRIPIQGMKA 1010
            |:||||:|||..|:.|..|...:.:....|..||||..|::..|||||||||||.:|:||.||.|
Zfish   766 VLVGNEEYDWNILKQNTTYEGVFNADHPVIISFWEVFDDLTPNEKKSFLLFLTGFERVPILGMSA 830

  Fly  1011 LKLTIQ--PTPDERFLPVAHTCFNLLDLPRYKTKERLKYKLLQAIQQTQGF 1059
            :|:.:.  ....|..||...||.:||.||:|:.:|.|:.|:::||...:||
Zfish   831 VKMRVTHLANSTEDHLPETLTCHSLLQLPKYEKRETLRAKVIEAISHKRGF 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 RCC1 6..55 CDD:278826
RCC1 59..110 CDD:278826
RCC1 114..163 CDD:278826 9/20 (45%)
RCC1 167..218 CDD:278826 24/50 (48%)
RCC1 221..270 CDD:278826 22/48 (46%)
RCC1 273..322 CDD:278826 26/48 (54%)
RCC1_2 309..339 CDD:290274 12/29 (41%)
RCC1 327..390 CDD:278826 16/62 (26%)
HECTc 715..1060 CDD:238033 139/350 (40%)
HECTc 739..1059 CDD:214523 129/324 (40%)
herc5.1XP_017211386.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57432
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 1 1.000 - - FOG0001110
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45622
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X678
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
87.890

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