DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and herc4

DIOPT Version :9

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:XP_005173092.1 Gene:herc4 / 557513 ZFINID:ZDB-GENE-070801-1 Length:1052 Species:Danio rerio


Alignment Length:1071 Identity:479/1071 - (44%)
Similarity:672/1071 - (62%) Gaps:34/1071 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATGKVYACGSNDYSQ 71
            :.|||:.|.||||||||::|.:|.|.:..:.....|:.|.||.|||:||...|.||.||.||..|
Zfish     1 MLCWGNASFGQLGLGGIDEEVLLEPRRCEFFEGKRVRDVGCGRRHTVFLLEDGTVYTCGCNDLGQ 65

  Fly    72 LGHDLPTKRPRMSPFLLIPELQDYVIIQICCGSRHSLALSDWGQVLSWGDNDCGQLGHATDKEIV 136
            |||:...|:|..     :..|....|:.:.||..|:|||:|.|||.:||....||||.:..::.:
Zfish    66 LGHEKARKKPEQ-----VVSLDAQNIVAVSCGEAHTLALNDKGQVFAWGLGSDGQLGLSIVEDCL 125

  Fly   137 QLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNSPNDLTHCNYPLRLTTLL 201
            ::|:.|:.|....:.|:|||..|||||...||::|||.|.|||||:....... |: |..:.:|.
Zfish   126 RVPRTVKSLSEVHITQVACGYWHSLALARGGEIFSWGQNKYGQLGLGQQGACV-CS-PQVIQSLQ 188

  Fly   202 GIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLGLNDETNRSYPTQLKTLRTLGVRFVACGDEF 266
            |||...|:.||.|||.::.|||:||||||..|||||.|..:|.:|..|||||:..|.::.||::.
Zfish   189 GIPFGQISAGGAHSFGLTLSGAIFGWGRNKFGQLGLGDNDDRRFPVLLKTLRSQQVVYICCGEDH 253

  Fly   267 SVFLTNEGGVFTCGAGAYGQLGHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYA 331
            :..||.||||||.|||.||||||..:::|:.||.|.|||||.::|:|||.:||||.:||.|::.:
Zfish   254 TAALTKEGGVFTFGAGGYGQLGHNSTNHEVNPRKVFELMGSVVSQIACGRQHTLAFIPSSGKIDS 318

  Fly   332 FGLGSSGQLGTRSTKSLMLPQVVIGPWVSPSGSALLQSNDSQVSLVIRQIFSGGDQSIVTTTLFV 396
            ||||.:||||||||.:.:.|..|.|.|.:.:....:..::::.|..:::|::|||||.....|..
Zfish   319 FGLGGNGQLGTRSTCNRISPTPVKGCWRAHADPVAMDHSEAERSYCVKRIYAGGDQSFAHYALSE 383

  Fly   397 DKVPPEDFRNYNPKSQILTLTAEVTKQCAQCKQGL-QSDMDLLSSIELIFRSQACWNGSFL-LDH 459
            |..||.|.|...|..||.||:.|:.::  ....|| :...::...|:|:|.|.:|.||||| ..:
Zfish   384 DDGPPLDVRITRPAGQIYTLSTELIQK--WLNHGLGRIPAEITDEIDLVFSSASCLNGSFLSSSN 446

  Fly   460 DRHFGCSVRNHGLDLKAAQLAFDNLRAVENESIRQVIWDNITKELVGSLVCSPADVESMRLYLLL 524
            ..|:..|.:..|:|:..|:|.|..|...::..|.|:|..::.|.|:..|..||.|:|::||||.|
Zfish   447 PDHYSTSSKCSGVDINTARLLFHKLIQTDHPQISQIIAASLEKNLLPKLSSSPPDIEALRLYLTL 511

  Fly   525 PLYHEFVNSKHYKSLQVPFANAIFKLAENPRKVLNKWLAQTPAEYFEHLVQNFLHVVIHIISF-K 588
            |......|..::.:|.:|||.||..|.:.|.|||..|.::.....|:.||:.:..||::::.. |
Zfish   512 PECPLLCNPNNFTTLTIPFAKAIVSLKDAPIKVLGNWWSRFEPVVFQRLVELYKEVVVYLLRMQK 576

  Fly   589 MGLAAASPSAERRQQLLPYNTELEIILKLMKTLCQINNERHDRLNYQIFYWPDLSDYADVQQEYV 653
            :|:    |.:|:|    .:...|:..|||::.|..:|......:.|..||..:|.:..|::.:|.
Zfish   577 LGI----PLSEQR----IFTCFLDTSLKLLEILHSVNERAGQIIQYDKFYIHELDELIDIRNDYA 633

  Fly   654 KW-------IMADTARDFNICNYSFIFDQSAKTALLQADQALQMHSAMANAATMAFS--FFNYG- 708
            .|       ::.|:  ...:|.|.|:||..|||||||.|..:||..|:..|....|:  |.:.| 
Zfish   634 TWFQQQMFSVVMDS--QVTLCKYPFVFDAQAKTALLQTDAVIQMQMAVDQAQRQNFTSLFLSGGG 696

  Fly   709 -MPISQFIVLNVTRENLVQDSLRELQHYSQSDLKKPLKIKFHGEEAEDAGGVRKEFFMLLLKDLL 772
             ..::..::|.|.|||:|.||:..|:.....|.|||||:.|.||||.||||||||||:|::|:||
Zfish   697 VESVNPCLILIVRRENVVGDSMEVLRKSKNVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMKELL 761

  Fly   773 DPKYGMFKEYEQSRLLWFADLTFETENMYFLIGVLCGLAIYNFTIINLPFPLALFKKLLGKPVDL 837
            .||||||:.:|:|||:|||..|||..:::.||||:|||||||.||:.|.|||||:||||.|...|
Zfish   762 HPKYGMFRFHEESRLIWFACKTFEDIDLFHLIGVVCGLAIYNLTIVELNFPLALYKKLLKKTPTL 826

  Fly   838 SDLRQLSPPEANSMQSLLDYQGDDFKEVFDLTFEISRDVFGEAETKCLKPNGNEIAVTLENRQEF 902
            .||::|.|....|:|.||||..||.:|.|.|.|.|:.|.||..|...|.|||.:|:|...|||||
Zfish   827 EDLKELMPDVGRSLQQLLDYTEDDLEETFCLNFTITEDNFGATEVVELIPNGTDISVNKSNRQEF 891

  Fly   903 VDLYVDFVFNKSVELHYNAFHKGFMKVCSGRVIHIFQPEELMAVVVGNEDYDWQALQDNCEYREG 967
            |:.|||::|||||...::||:.||.|||.|:|:.:|||.||.|:|:||.:|||:.|:.:.||:..
Zfish   892 VNAYVDYIFNKSVAPQFSAFYAGFHKVCGGKVLELFQPSELQAMVIGNTNYDWKELEKSTEYKGE 956

  Fly   968 YTSVDDTIKWFWEVIHDMSEAEKKSFLLFLTGSDRIPIQGMKALKLTIQPTP-DERFLPVAHTCF 1031
            |.:...|||.||||.|::...:||.|||||||||||||.|||:|.|.||||. .|::.|||||||
Zfish   957 YWADHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLALVIQPTAGGEQYFPVAHTCF 1021

  Fly  1032 NLLDLPRYKTKERLKYKLLQAIQQTQGFSLV 1062
            ||||||:|.:|..::.|||.||:..|||:||
Zfish  1022 NLLDLPKYTSKNTMQEKLLHAIEHNQGFNLV 1052

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 RCC1 6..55 CDD:278826 22/47 (47%)
RCC1 59..110 CDD:278826 19/50 (38%)
RCC1 114..163 CDD:278826 19/48 (40%)
RCC1 167..218 CDD:278826 23/50 (46%)
RCC1 221..270 CDD:278826 25/48 (52%)
RCC1 273..322 CDD:278826 31/48 (65%)
RCC1_2 309..339 CDD:290274 15/29 (52%)
RCC1 327..390 CDD:278826 24/62 (39%)
HECTc 715..1060 CDD:238033 196/345 (57%)
HECTc 739..1059 CDD:214523 186/320 (58%)
herc4XP_005173092.1 RCC1 3..49 CDD:278826 22/45 (49%)
RCC1 52..99 CDD:278826 19/51 (37%)
RCC1 102..152 CDD:278826 19/49 (39%)
RCC1 156..205 CDD:278826 23/50 (46%)
RCC1 208..257 CDD:278826 25/48 (52%)
RCC1 260..308 CDD:278826 30/47 (64%)
RCC1 313..377 CDD:278826 24/63 (38%)
HECTc 704..1049 CDD:238033 195/344 (57%)
HECTc 730..1049 CDD:214523 185/318 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 343 1.000 Domainoid score I1038
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56715
Inparanoid 1 1.050 900 1.000 Inparanoid score I366
OMA 1 1.010 - - QHG57432
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 1 1.000 - - FOG0001110
OrthoInspector 1 1.000 - - otm25593
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45622
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R774
SonicParanoid 1 1.000 - - X678
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.970

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