Sequence 1: | NP_001261249.1 | Gene: | Herc4 / 38151 | FlyBaseID: | FBgn0035207 | Length: | 1062 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_005173092.1 | Gene: | herc4 / 557513 | ZFINID: | ZDB-GENE-070801-1 | Length: | 1052 | Species: | Danio rerio |
Alignment Length: | 1071 | Identity: | 479/1071 - (44%) |
---|---|---|---|
Similarity: | 672/1071 - (62%) | Gaps: | 34/1071 - (3%) |
- Green bases have known domain annotations that are detailed below.
Fly 7 LYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATGKVYACGSNDYSQ 71
Fly 72 LGHDLPTKRPRMSPFLLIPELQDYVIIQICCGSRHSLALSDWGQVLSWGDNDCGQLGHATDKEIV 136
Fly 137 QLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNSPNDLTHCNYPLRLTTLL 201
Fly 202 GIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLGLNDETNRSYPTQLKTLRTLGVRFVACGDEF 266
Fly 267 SVFLTNEGGVFTCGAGAYGQLGHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYA 331
Fly 332 FGLGSSGQLGTRSTKSLMLPQVVIGPWVSPSGSALLQSNDSQVSLVIRQIFSGGDQSIVTTTLFV 396
Fly 397 DKVPPEDFRNYNPKSQILTLTAEVTKQCAQCKQGL-QSDMDLLSSIELIFRSQACWNGSFL-LDH 459
Fly 460 DRHFGCSVRNHGLDLKAAQLAFDNLRAVENESIRQVIWDNITKELVGSLVCSPADVESMRLYLLL 524
Fly 525 PLYHEFVNSKHYKSLQVPFANAIFKLAENPRKVLNKWLAQTPAEYFEHLVQNFLHVVIHIISF-K 588
Fly 589 MGLAAASPSAERRQQLLPYNTELEIILKLMKTLCQINNERHDRLNYQIFYWPDLSDYADVQQEYV 653
Fly 654 KW-------IMADTARDFNICNYSFIFDQSAKTALLQADQALQMHSAMANAATMAFS--FFNYG- 708
Fly 709 -MPISQFIVLNVTRENLVQDSLRELQHYSQSDLKKPLKIKFHGEEAEDAGGVRKEFFMLLLKDLL 772
Fly 773 DPKYGMFKEYEQSRLLWFADLTFETENMYFLIGVLCGLAIYNFTIINLPFPLALFKKLLGKPVDL 837
Fly 838 SDLRQLSPPEANSMQSLLDYQGDDFKEVFDLTFEISRDVFGEAETKCLKPNGNEIAVTLENRQEF 902
Fly 903 VDLYVDFVFNKSVELHYNAFHKGFMKVCSGRVIHIFQPEELMAVVVGNEDYDWQALQDNCEYREG 967
Fly 968 YTSVDDTIKWFWEVIHDMSEAEKKSFLLFLTGSDRIPIQGMKALKLTIQPTP-DERFLPVAHTCF 1031
Fly 1032 NLLDLPRYKTKERLKYKLLQAIQQTQGFSLV 1062 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Herc4 | NP_001261249.1 | RCC1 | 6..55 | CDD:278826 | 22/47 (47%) |
RCC1 | 59..110 | CDD:278826 | 19/50 (38%) | ||
RCC1 | 114..163 | CDD:278826 | 19/48 (40%) | ||
RCC1 | 167..218 | CDD:278826 | 23/50 (46%) | ||
RCC1 | 221..270 | CDD:278826 | 25/48 (52%) | ||
RCC1 | 273..322 | CDD:278826 | 31/48 (65%) | ||
RCC1_2 | 309..339 | CDD:290274 | 15/29 (52%) | ||
RCC1 | 327..390 | CDD:278826 | 24/62 (39%) | ||
HECTc | 715..1060 | CDD:238033 | 196/345 (57%) | ||
HECTc | 739..1059 | CDD:214523 | 186/320 (58%) | ||
herc4 | XP_005173092.1 | RCC1 | 3..49 | CDD:278826 | 22/45 (49%) |
RCC1 | 52..99 | CDD:278826 | 19/51 (37%) | ||
RCC1 | 102..152 | CDD:278826 | 19/49 (39%) | ||
RCC1 | 156..205 | CDD:278826 | 23/50 (46%) | ||
RCC1 | 208..257 | CDD:278826 | 25/48 (52%) | ||
RCC1 | 260..308 | CDD:278826 | 30/47 (64%) | ||
RCC1 | 313..377 | CDD:278826 | 24/63 (38%) | ||
HECTc | 704..1049 | CDD:238033 | 195/344 (57%) | ||
HECTc | 730..1049 | CDD:214523 | 185/318 (58%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 343 | 1.000 | Domainoid score | I1038 |
eggNOG | 1 | 0.900 | - | - | E1_COG5021 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H56715 | |
Inparanoid | 1 | 1.050 | 900 | 1.000 | Inparanoid score | I366 |
OMA | 1 | 1.010 | - | - | QHG57432 | |
OrthoDB | 1 | 1.010 | - | - | D1062377at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001110 | |
OrthoInspector | 1 | 1.000 | - | - | otm25593 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR45622 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R774 |
SonicParanoid | 1 | 1.000 | - | - | X678 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
14 | 13.970 |