DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and rcc1

DIOPT Version :9

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:NP_001016101.1 Gene:rcc1 / 548855 XenbaseID:XB-GENE-979094 Length:420 Species:Xenopus tropicalis


Alignment Length:408 Identity:119/408 - (29%)
Similarity:191/408 - (46%) Gaps:50/408 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 GKELYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATGKVYACGSND 68
            |.::...|....||||||  ||........:...|:..| |.|.|..||:.|.|:|.:|..|.||
 Frog    36 GGQVLTLGQGDVGQLGLG--EDVMERKKPALVTLPEDIV-QAAAGGMHTVCLGASGSIYTFGCND 97

  Fly    69 YSQLGHDLPTKRPRMSPFLLIPELQDYV--IIQICCGSRHSLALSDWGQVLSWG---DNDCGQLG 128
            ...||.|...:.....|..:     |.|  ::|:..|..|:.||::.|:|..:|   ||: |.:|
 Frog    98 EGALGRDTSEEGSETQPGKV-----DLVEKVVQVSAGDSHTAALTEDGRVFVFGSFRDNN-GVIG 156

  Fly   129 HATDKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNSPNDLTHCNY 193
            .....:...:|  |:..:...|::||.||:|.:.||..|:||:.|....|||| ..|...|:...
 Frog   157 LLEPMKKSMVP--VQMQINAPVIKIASGNDHLVLLTVDGDLYTSGCGEQGQLG-RVPERFTNRGG 218

  Fly   194 PLRLTTLLGIP----LAA----------IACGGNHSFLISKSGAVFGWGRNNCGQLGLNDETNRS 244
            ...|..|| :|    |.|          :.||...:|.:|:.|.|:|:|.:|..|||.....:..
 Frog   219 RKGLERLL-VPQCIHLKAKGSGRVHFQDVFCGAYFTFAVSQEGHVYGFGLSNYHQLGTKTTQSCF 282

  Fly   245 YPTQLKTLRTLGVRFV--ACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFSSNEMLPRMVMELMGS 307
            .|..|.:.:.....:|  :.|...::.:.:||.|::.|...||:||.|.::.|:.....:.::..
 Frog   283 APQNLTSFKNSTKSWVGFSGGQHHTICVDSEGKVYSLGRAEYGRLGLGENAEELSEPTPIPILPK 347

  Fly   308 TITQVACGNRHTLALVPSRGRVYAFGLGSSGQLGTRSTKSLMLPQVVIGPWVSPSGSALLQSNDS 372
            | ..||||...:.| |.:.|||:|:|:|::.||||...:.:..||.:.|        ..|:..| 
 Frog   348 T-KSVACGASVSYA-VSNDGRVFAWGMGTNLQLGTGEEEDVWSPQEMTG--------KQLEDRD- 401

  Fly   373 QVSLVIRQIFSGGDQSIV 390
                 :..:.|||..:::
 Frog   402 -----VLSVSSGGQHTVL 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 RCC1 6..55 CDD:278826 16/48 (33%)
RCC1 59..110 CDD:278826 14/52 (27%)
RCC1 114..163 CDD:278826 15/51 (29%)
RCC1 167..218 CDD:278826 19/64 (30%)
RCC1 221..270 CDD:278826 12/50 (24%)
RCC1 273..322 CDD:278826 15/48 (31%)
RCC1_2 309..339 CDD:290274 12/29 (41%)
RCC1 327..390 CDD:278826 18/62 (29%)
HECTc 715..1060 CDD:238033
HECTc 739..1059 CDD:214523
rcc1NP_001016101.1 ATS1 21..418 CDD:227511 119/408 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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