Sequence 1: | NP_001261249.1 | Gene: | Herc4 / 38151 | FlyBaseID: | FBgn0035207 | Length: | 1062 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001016101.1 | Gene: | rcc1 / 548855 | XenbaseID: | XB-GENE-979094 | Length: | 420 | Species: | Xenopus tropicalis |
Alignment Length: | 408 | Identity: | 119/408 - (29%) |
---|---|---|---|
Similarity: | 191/408 - (46%) | Gaps: | 50/408 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 GKELYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATGKVYACGSND 68
Fly 69 YSQLGHDLPTKRPRMSPFLLIPELQDYV--IIQICCGSRHSLALSDWGQVLSWG---DNDCGQLG 128
Fly 129 HATDKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNSPNDLTHCNY 193
Fly 194 PLRLTTLLGIP----LAA----------IACGGNHSFLISKSGAVFGWGRNNCGQLGLNDETNRS 244
Fly 245 YPTQLKTLRTLGVRFV--ACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFSSNEMLPRMVMELMGS 307
Fly 308 TITQVACGNRHTLALVPSRGRVYAFGLGSSGQLGTRSTKSLMLPQVVIGPWVSPSGSALLQSNDS 372
Fly 373 QVSLVIRQIFSGGDQSIV 390 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Herc4 | NP_001261249.1 | RCC1 | 6..55 | CDD:278826 | 16/48 (33%) |
RCC1 | 59..110 | CDD:278826 | 14/52 (27%) | ||
RCC1 | 114..163 | CDD:278826 | 15/51 (29%) | ||
RCC1 | 167..218 | CDD:278826 | 19/64 (30%) | ||
RCC1 | 221..270 | CDD:278826 | 12/50 (24%) | ||
RCC1 | 273..322 | CDD:278826 | 15/48 (31%) | ||
RCC1_2 | 309..339 | CDD:290274 | 12/29 (41%) | ||
RCC1 | 327..390 | CDD:278826 | 18/62 (29%) | ||
HECTc | 715..1060 | CDD:238033 | |||
HECTc | 739..1059 | CDD:214523 | |||
rcc1 | NP_001016101.1 | ATS1 | 21..418 | CDD:227511 | 119/408 (29%) |
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1062377at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.920 |