DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and Herc6

DIOPT Version :9

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:XP_008761185.1 Gene:Herc6 / 362376 RGDID:1561739 Length:1027 Species:Rattus norvegicus


Alignment Length:1063 Identity:351/1063 - (33%)
Similarity:541/1063 - (50%) Gaps:111/1063 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 QVACGHRHTLFLTATGKVYACGSNDYSQLGHDLP--TKRPRMSPFLLIPELQDYVIIQICCGSRH 106
            :.|.|.||:|.|.:..:||:||.|...|||...|  ||||..     |..|....|..:.||..|
  Rat    25 KAASGERHSLLLFSNHRVYSCGDNSRGQLGQKSPQSTKRPEP-----IQALSTVHIDLVSCGKEH 84

  Fly   107 SLALSDWGQVLSWGDNDCGQLGHATDKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYS 171
            |:|:...|:|.:||....||||....|||..:|..:..|....::|::||:.|||||:..|:::|
  Rat    85 SVAVCHQGRVFTWGAGSEGQLGIGESKEISFMPTKINSLAGIKIIQVSCGHYHSLALSEDGQVFS 149

  Fly   172 WGSNIYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLG 236
            ||||..||||:.  |:|.....|.::.:|.|||||.:|.||.|||.:|..|..||||.|..|||.
  Rat   150 WGSNRQGQLGLG--NNLCSQASPQKVKSLEGIPLAQVAAGGTHSFALSLMGTSFGWGNNRSGQLA 212

  Fly   237 L--NDETNRSY-PTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFSSNEMLP 298
            |  |....:.| |..:..|:||.|.:::||.|.:..||.:|.|||.|..:..||.|...|....|
  Rat   213 LSGNSAKEQIYKPHSIGALKTLNVVYISCGYEHTSVLTEDGQVFTFGGSSSEQLQHSPRSGRGGP 277

  Fly   299 RMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSSGQLGTRSTKSLMLPQVVIGPWVSPSG 363
            ::: |.:|..::|:.||:.||:|.|.:.|:|.:.|.|.|........::           .....
  Rat   278 QLI-EGIGGHVSQIECGSYHTIAYVYTTGQVVSLGRGPSCTSNATHQEA-----------ACSDV 330

  Fly   364 SALLQSNDSQVSLVIRQIFSGGDQSIVTT------TLFVDKVPPEDFRNYNPKSQILTLTAEVTK 422
            :.||.:.| .|.:.::.||:|...:.|||      |....|:.||          |:.:|..:.|
  Rat   331 TCLLSAKD-LVDIEVKDIFAGAHANFVTTCRHTRSTSVSMKILPE----------IIRITQPLVK 384

  Fly   423 QCAQCKQGLQSDMDLLSSIELIFRSQACWNGSFLLDHDRHFGCSVRNH--GLDLKAAQLAFDNLR 485
            :....|:|...: |....|.|||.|.||...|||...|     :..|:  .:|||.|:..|..|.
  Rat   385 KWRAAKKGKVHE-DAKREISLIFSSPACLTASFLKKRD-----AGENNFINVDLKLARDVFKMLT 443

  Fly   486 AVENESIRQVIWDNITKELVGSLVCSPADVESMRLYLLLPLYHEFVNSKHYKSLQVPFANAIFKL 550
            |  .:.|..:|...:.:.|:..|..|....|::.::||||......:.|::|:|...||:||.|:
  Rat   444 A--EKWISSLITTCLEETLLRGLPYSSPHQEALLVFLLLPECSIMQDPKNWKTLAFEFASAIHKM 506

  Fly   551 AENPRKVLNKWLAQTPAEYFEHLVQ-------NFLHVVIHIISFKMGLAAASPSAERRQQLLP-- 606
            .......|..|.|.........|||       :.||..:.::.....|..:....:..|::|.  
  Rat   507 RSKSLTFLRNWWASLEVSSLNSLVQMLKKTIVSQLHNEVPMMKDTSNLKVSLEMMKEVQKILEKT 571

  Fly   607 ----YN--------TELEIILKLMKTLCQINNERHDRLNYQIFYWPDLSDY-------ADVQQEY 652
                :|        :.|:::|::||.:    :|.:.:|....|...|:.::       |..|..:
  Rat   572 NSHLHNEVPKMEDTSNLKVLLEVMKEV----HEANCQLPENAFIMNDIFNFNTEEGIMAKQQMFF 632

  Fly   653 VKWIMADTARDFNICNYSFIFDQSAKTALLQADQALQMHSAMANAATMAFSFFNYGMPISQFIVL 717
            :|:.    :..||  ::.||.|..:|..|::.|.::::...:..||:..    ..|.|   |.:|
  Rat   633 IKYY----SMVFN--DFPFILDLPSKIILMKHDSSVKLSDEVKVAASPE----KMGCP---FFIL 684

  Fly   718 NVTRENLVQDSLRELQHYSQSDLKKPLKIKFHGEEAEDAGGVRKEFFMLLLKDLLDPKYGMFKEY 782
            .|.|.:||:|:||:|:.....||:|.|.:.|..|...:.|||..|||..:.:::.||||.||...
  Rat   685 KVRRSHLVEDTLRQLRQAEDFDLRKTLSVGFINEIRPEGGGVSSEFFHCIFEEMTDPKYEMFMYP 749

  Fly   783 EQSRLLWF-ADLTFETENMYFLIGVLCGLAIYNFTIINLPFPLALFKKLLGKPVDLSDLRQLSPP 846
            |....:|| .:..|| ::.|||.|:||||::.|..:|||.|||||:||||.:...|.||:.||..
  Rat   750 ENGSNMWFPVNPKFE-KSRYFLFGILCGLSLNNLNVINLSFPLALYKKLLEQKPSLEDLKDLSLL 813

  Fly   847 EANSMQSLLDYQGDDFKEVFDLTFEI---SRDVFGEAETKCLKPNGNEIAVTLENRQEFVDLYVD 908
            ...::|.:|:.:....:|: .:.|.|   .|||       .|.|:|..:.|...|::::|...||
  Rat   814 LGRNLQEVLNCEAGVIEEL-HMYFSIYWDQRDV-------DLIPDGISVPVNETNKRDYVSKCVD 870

  Fly   909 FVFNKSVELHYNAFHKGFMKVCSGRVIHIFQPEELMAVVVGNEDYDWQALQDNCEYREGYTSVDD 973
            ::||.|::..|:.||:||.|||:...|..||||||||.::||...||:..::|.:|..||:....
  Rat   871 YIFNISIKTIYDEFHRGFYKVCNRDSIRHFQPEELMAAIIGNPTCDWKQFENNSKYENGYSKSHP 935

  Fly   974 TIKWFWEVIHDMSEAEKKSFLLFLTGSDRIPIQGM--KALKLTIQPTPDERFLPVAHTCFNLLDL 1036
            ||..||:..|:::..|||.|||||||.||:.::|:  :.::........||..|.:.||.::|||
  Rat   936 TILLFWKAFHELTLDEKKKFLLFLTGCDRLHVKGLQNEGIRFRCPEVFSERDNPRSLTCHSILDL 1000

  Fly  1037 PRYKTKERLKYKLLQAIQQTQGF 1059
            |:|.|..|:|..|..||...:||
  Rat  1001 PKYSTMRRMKEALQVAINNNKGF 1023

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 RCC1 6..55 CDD:278826 5/10 (50%)
RCC1 59..110 CDD:278826 20/52 (38%)
RCC1 114..163 CDD:278826 19/48 (40%)
RCC1 167..218 CDD:278826 25/50 (50%)
RCC1 221..270 CDD:278826 20/51 (39%)
RCC1 273..322 CDD:278826 17/48 (35%)
RCC1_2 309..339 CDD:290274 12/29 (41%)
RCC1 327..390 CDD:278826 12/62 (19%)
HECTc 715..1060 CDD:238033 138/351 (39%)
HECTc 739..1059 CDD:214523 127/325 (39%)
Herc6XP_008761185.1 RCC1 39..88 CDD:278826 20/53 (38%)
RCC1 92..141 CDD:278826 19/48 (40%)
RCC1 144..194 CDD:278826 25/51 (49%)
RCC1_2 182..210 CDD:290274 14/27 (52%)
RCC1_2 236..265 CDD:290274 11/28 (39%)
RCC1 252..299 CDD:278826 17/47 (36%)
HECTc 682..1023 CDD:238033 136/349 (39%)
HECTc 706..1023 CDD:214523 127/325 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57432
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 1 1.000 - - FOG0001110
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45622
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X678
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.890

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