DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and Ube3c

DIOPT Version :9

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:XP_038964472.1 Gene:Ube3c / 362294 RGDID:1559986 Length:1083 Species:Rattus norvegicus


Alignment Length:763 Identity:190/763 - (24%)
Similarity:313/763 - (41%) Gaps:163/763 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   401 PEDFRNYNPKSQILTLTAEVTKQCAQ---CKQGLQSDMDLL---SSIELIFRSQACWNGSFLLDH 459
            |||.|...|         .:|::|.:   .||...:.::|:   |:.|.:|...|....:.::.|
  Rat   381 PEDGRVSAP---------YITEECLRKLDTKQQTNTLLNLVWRDSASEEVFTRMASICHTLMVQH 436

  Fly   460 DRHFGCSVRNHGLDLKAAQLAFDNLRAVENESIRQVIWDNI----TKELVGSLV--------CSP 512
             |.....||      ....||| |.|.:.:      :|..|    |:.:.||:|        .||
  Rat   437 -RMMVPKVR------LLYSLAF-NARFLRH------LWFLISSMTTQMITGSMVPLLQVISRGSP 487

  Fly   513 ADVE-SMRLYLLLPLYHEFVNSKHYKSLQVPFANAIFKLAEN-----PRKVL-NKWLAQTPAEYF 570
            ...| |.|   ::||::.|      .||   |::::..:.:|     |.:|: .:.|:..|....
  Rat   488 MSFEDSSR---IIPLFYLF------SSL---FSHSLISIHDNEFFGDPIEVVGQRQLSMMPFTLE 540

  Fly   571 EHLVQN--FLHVVIHIISFKMGLAAASPSAERRQQL--------LPYNTELE-----------II 614
            |.::.:  .....:.||.    ||......|.|::.        :..|:|::           .:
  Rat   541 ELILLSRCLRDACLGIIK----LAYPETKPEVREEYVSAFQSIGVTTNSEMQHCIQMEQKRWVQL 601

  Fly   615 LKLMKTLCQINNERHDRLNY-QIFYWPDLSDYADVQQEYVKWIMADTARDFNICNYSFIFDQSAK 678
            .|::..|.::...|..|.|: ...:|  ||:..|::.:.|..:....:|      :.:.|.:..:
  Rat   602 FKVITNLVKMLKSRDTRRNFCPPNHW--LSEQEDIKADKVTQLYVPASR------HVWRFRRMGR 658

  Fly   679 TALLQADQALQMHS---------AMANAATMAFSF-FNYGMPISQFIV----------------L 717
            ...||:...:.:.|         .:|....:.|.. |...:.|.|.::                :
  Rat   659 IGPLQSTLEVGLESPPLSVSEERQLAILTELPFVVPFEERVKIFQRLIYADKQEVQGDGPFLDGI 723

  Fly   718 NVT--RENLVQDSLRELQHYSQSDLKKPLKIKF---HG--EEAEDAGGVRKEFFMLLLKDLLDPK 775
            |||  |..:.:|:..:|...::.||||.:::..   ||  |...|.||:.:||...|||...:|.
  Rat   724 NVTIRRNYIYEDAYDKLSPENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPN 788

  Fly   776 YGMFKEYEQSRLLW------------FADLTFETENMYFLIGVLCGLAIYNFTIINLPFPLALFK 828
            .|.||...:. ||:            ||       ..|:.:|.:.|.|:|...::.|||......
  Rat   789 QGFFKTTNEG-LLYPNPAAQMLVGDSFA-------RHYYFLGRMLGKALYENMLVELPFAGFFLS 845

  Fly   829 KLLG--KPVDLSDLRQLSPPEANSMQSLLDYQGDDFKEVFDLTFEISRDVFGEAETKCLKPNGNE 891
            ||||  ..||:..|..|.|....::..|..|:.|  .|...|.|.:..:..|||:...||..|.:
  Rat   846 KLLGTSADVDIHHLASLDPEVYKNLLFLKSYEED--VEELGLNFTVVNNDLGEAQVVELKFGGKD 908

  Fly   892 IAVTLENRQEFVDLYVDFVFNKSVELHYNAFHKGFMKVCSGRVIHIFQPEELMAVVVGNE-DYDW 955
            |.||..||..::.|..|:..||.:..|..||.:|...|.|...:.:|..:|:..::.|.: ....
  Rat   909 IPVTGANRIAYIHLVADYRLNKQIRPHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPVSL 973

  Fly   956 QALQDNCEYREGYTSVDDTIKWFWEVIHDMSEAEKKSFLLFLTGSDRIPIQGMKALKLTIQPT-- 1018
            :.|:....|..||::....||.||.|:...::.||:..|.|:|...|.|:.|.|.|    .|.  
  Rat   974 EDLKSFTNYSGGYSADHPVIKIFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKEL----YPAFC 1034

  Fly  1019 -----PDERFLPVAHTCFNLLDLPRYKTKERLKYKLLQAIQQTQGFSL 1061
                 .|...||.|.||.|||.||.:..:..|:.|||.||:...||.|
  Rat  1035 IHNGGSDLERLPTASTCMNLLKLPEFYDEALLRSKLLYAIECAAGFEL 1082

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 RCC1 6..55 CDD:278826
RCC1 59..110 CDD:278826
RCC1 114..163 CDD:278826
RCC1 167..218 CDD:278826
RCC1 221..270 CDD:278826
RCC1 273..322 CDD:278826
RCC1_2 309..339 CDD:290274
RCC1 327..390 CDD:278826
HECTc 715..1060 CDD:238033 114/389 (29%)
HECTc 739..1059 CDD:214523 107/346 (31%)
Ube3cXP_038964472.1 IQ 47..64 CDD:197470
HECTc 725..1081 CDD:238033 113/369 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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