Sequence 1: | NP_001261249.1 | Gene: | Herc4 / 38151 | FlyBaseID: | FBgn0035207 | Length: | 1062 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038964472.1 | Gene: | Ube3c / 362294 | RGDID: | 1559986 | Length: | 1083 | Species: | Rattus norvegicus |
Alignment Length: | 763 | Identity: | 190/763 - (24%) |
---|---|---|---|
Similarity: | 313/763 - (41%) | Gaps: | 163/763 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 401 PEDFRNYNPKSQILTLTAEVTKQCAQ---CKQGLQSDMDLL---SSIELIFRSQACWNGSFLLDH 459
Fly 460 DRHFGCSVRNHGLDLKAAQLAFDNLRAVENESIRQVIWDNI----TKELVGSLV--------CSP 512
Fly 513 ADVE-SMRLYLLLPLYHEFVNSKHYKSLQVPFANAIFKLAEN-----PRKVL-NKWLAQTPAEYF 570
Fly 571 EHLVQN--FLHVVIHIISFKMGLAAASPSAERRQQL--------LPYNTELE-----------II 614
Fly 615 LKLMKTLCQINNERHDRLNY-QIFYWPDLSDYADVQQEYVKWIMADTARDFNICNYSFIFDQSAK 678
Fly 679 TALLQADQALQMHS---------AMANAATMAFSF-FNYGMPISQFIV----------------L 717
Fly 718 NVT--RENLVQDSLRELQHYSQSDLKKPLKIKF---HG--EEAEDAGGVRKEFFMLLLKDLLDPK 775
Fly 776 YGMFKEYEQSRLLW------------FADLTFETENMYFLIGVLCGLAIYNFTIINLPFPLALFK 828
Fly 829 KLLG--KPVDLSDLRQLSPPEANSMQSLLDYQGDDFKEVFDLTFEISRDVFGEAETKCLKPNGNE 891
Fly 892 IAVTLENRQEFVDLYVDFVFNKSVELHYNAFHKGFMKVCSGRVIHIFQPEELMAVVVGNE-DYDW 955
Fly 956 QALQDNCEYREGYTSVDDTIKWFWEVIHDMSEAEKKSFLLFLTGSDRIPIQGMKALKLTIQPT-- 1018
Fly 1019 -----PDERFLPVAHTCFNLLDLPRYKTKERLKYKLLQAIQQTQGFSL 1061 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Herc4 | NP_001261249.1 | RCC1 | 6..55 | CDD:278826 | |
RCC1 | 59..110 | CDD:278826 | |||
RCC1 | 114..163 | CDD:278826 | |||
RCC1 | 167..218 | CDD:278826 | |||
RCC1 | 221..270 | CDD:278826 | |||
RCC1 | 273..322 | CDD:278826 | |||
RCC1_2 | 309..339 | CDD:290274 | |||
RCC1 | 327..390 | CDD:278826 | |||
HECTc | 715..1060 | CDD:238033 | 114/389 (29%) | ||
HECTc | 739..1059 | CDD:214523 | 107/346 (31%) | ||
Ube3c | XP_038964472.1 | IQ | 47..64 | CDD:197470 | |
HECTc | 725..1081 | CDD:238033 | 113/369 (31%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |