DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and Hace1

DIOPT Version :9

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:XP_006512697.1 Gene:Hace1 / 209462 MGIID:2446110 Length:921 Species:Mus musculus


Alignment Length:833 Identity:199/833 - (23%)
Similarity:346/833 - (41%) Gaps:160/833 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   301 VMELMGSTITQVACGNRH--TLALVPSRGR----------------------VYAFGLGSSGQLG 341
            |.:.||.|...|||.|.|  |:..:...|.                      ::...:.|.||  
Mouse   159 VEDAMGQTALHVACQNGHKTTVQCLLDSGADINRPNVSGATPLYFACRRVCLIFWTWIHSHGQ-- 221

  Fly   342 TRSTKSLMLPQVVIGPWVSPSGSAL------LQSNDSQVSLVIRQIFSGGDQSIVTTTLFVDKVP 400
             |.|..::|   :.|....|..:.:      :|....|...|:.|......|:||..|      .
Mouse   222 -RDTAQILL---LRGAKYLPDKNGVTPLDLCVQGGYGQTCEVLIQYHPRLFQTIVQMT------Q 276

  Fly   401 PEDFR-----------NYNPKSQ---ILTLTAEVTKQCAQCKQGLQSDMDL-LSSIELIFRSQAC 450
            .||.|           :...:||   |||..|||..........|.|:.|. :.|:..|.|    
Mouse   277 NEDLRENMLRQVLQHLSQQSESQYLKILTGLAEVATTNGHKLLSLSSNYDAQMKSLLRIVR---- 337

  Fly   451 WNGSFLLDHDRHFGCSVRNHGLDLKAAQLAFDNLRAVENESIR--QVIWDNITKELVGSLVCS-- 511
                 :..|....|.|..::|:|     :.::..:...::..:  :::|.::.:.||  |:.:  
Mouse   338 -----IFCHVFRIGPSSPSNGID-----MGYNGNKTPRSQVFKPLELLWHSLDEWLV--LIATEL 390

  Fly   512 ------PADVESMRLYLLLPLYHEFVNSKHYKSLQVPFANAIFKLA-----ENPRKVLNKWLAQT 565
                  ..|:.|    :||....:...:....:.:.|...:...|.     ..|..:..:..|..
Mouse   391 MKNKEDSTDITS----ILLKQKGQDQEAPSLSAFEPPGPGSYESLPPGPGDSKPEVLAGEQEASA 451

  Fly   566 PAEYFEHLVQNFLHVVIHIISFKMGLAAASPSAERRQQLLPYNTELEIILKLMKTLCQINNERHD 630
            ..:....:..|.|..||.  :|.|..:...|......:.:.:..:.:.:||     |.:|  |:.
Mouse   452 DCQDVISVTANRLSAVIQ--AFYMCCSCQMPPGMTSPRFIEFVCKHDEVLK-----CFVN--RNP 507

  Fly   631 RLNYQIFYWPDLSDYADVQQEYVKWIMADTARDFNICNYSFIFDQSAKTALLQADQALQMHSAMA 695
            ::.:..|::  |.:..::...::..|.|...:|  .|.:.:                ..:||...
Mouse   508 KIIFDHFHF--LLECPELMSRFMHIIKAQPFKD--RCEWFY----------------EHLHSGQP 552

  Fly   696 NAATMAFSFFNYGMPISQFIVLNVTRENLVQDSLRELQHYSQSDLKKPLKIKFHGEEAEDAGGVR 760
            ::..:       ..|:|:..:|.|.|:::.:.|...:...:.:.||:.:.::|||||....|.||
Mouse   553 DSDMV-------HRPVSENDILLVHRDSIFRSSCEIVSKANCAKLKQGIAVRFHGEEGMGQGVVR 610

  Fly   761 KEFFMLLLKDLLDPKYGMFKEYEQSRLLWFAD-LTFETE----------NMYFLIGVLCGLAIYN 814
             |:|.:|..::::|.|.:|.:        .|| .||:..          |.:...|.:.|||:.:
Mouse   611 -EWFDILSNEIVNPDYALFTQ--------SADGTTFQPNSNSYVNPDHLNYFRFAGQILGLALNH 666

  Fly   815 FTIINLPFPLALFKKLLGKPVDLSDLRQLSPPEANSMQSLLDYQGDDFKEV-FDLTFEISRDVFG 878
            ..::|:.|..:.:|.:||.||:..|:..:.|..|.::|.:||   :|..:: .:|||.:..||||
Mouse   667 RQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILD---NDISDLGLELTFSVETDVFG 728

  Fly   879 EAETKCLKPNGNEIAVTLENRQEFVDLYVDFVFNKSVELHYNAFHKGFMKVCSGRVIHIFQPEEL 943
            ..|...|||.|..|.||..|:.|:|.|..:....::::...|||.:||.......:|.:|...||
Mouse   729 AMEEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDEYEL 793

  Fly   944 MAVVVGNEDYDWQALQDNCEYREGYTSVDDTIKWFWEVIHDMSEAEKKSFLLFLTGSDRIP---- 1004
            ..::.|..:.|......|.||..||...|..|:|||||:.|:::.|:...|.|:|||.|:|    
Mouse   794 ELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGSSRVPHGGF 858

  Fly  1005 --IQGMKALK-LTIQPTP-DERFLPVAHTCFNLLDLPRYKTKERLKYKLLQAI 1053
              |.|...|: .||...| ....||.:.||.|:|.||.|.:||.||.:||.|:
Mouse   859 ANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVAL 911

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 RCC1 6..55 CDD:278826
RCC1 59..110 CDD:278826
RCC1 114..163 CDD:278826
RCC1 167..218 CDD:278826
RCC1 221..270 CDD:278826
RCC1 273..322 CDD:278826 10/22 (45%)
RCC1_2 309..339 CDD:290274 8/53 (15%)
RCC1 327..390 CDD:278826 14/90 (16%)
HECTc 715..1060 CDD:238033 116/359 (32%)
HECTc 739..1059 CDD:214523 112/335 (33%)
Hace1XP_006512697.1 ANK repeat 66..95 CDD:293786
Ank_2 69..194 CDD:372319 11/34 (32%)
ANK repeat 97..128 CDD:293786
ANK repeat 130..161 CDD:293786 1/1 (100%)
ANK repeat 163..194 CDD:293786 10/30 (33%)
Ank_2 168..263 CDD:372319 18/100 (18%)
ANK repeat 196..233 CDD:293786 6/42 (14%)
HECTc 566..915 CDD:238033 116/358 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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