DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and hecw-1

DIOPT Version :9

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:NP_001317872.1 Gene:hecw-1 / 175438 WormBaseID:WBGene00009738 Length:1247 Species:Caenorhabditis elegans


Alignment Length:699 Identity:173/699 - (24%)
Similarity:289/699 - (41%) Gaps:117/699 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   393 TLFVDKVPPE-------DFRNYNPKSQILTLTAEVTKQCAQCKQGLQSDMDLLSSIEL-IFRSQA 449
            ||..:.:.||       ..|:.:|::..:|....:|.:.|.|.:.     ||:...:. .|::..
 Worm   635 TLNNNHIEPETPVHKRLSDRSASPRNSFITPRRTITVRSAGCPKS-----DLIQFFQRDEFKTAL 694

  Fly   450 CWNGSFLLDHDRHFGCSVRNHGLDLKAAQLAFDNLRAVENESIRQVIWDNITKELVGSLVCSPAD 514
            ..|...:..::.   |||..|.:                         ..|.|:|     ..|:.
 Worm   695 YENQDAMQIYNE---CSVVRHAI-------------------------HRIQKDL-----DPPSK 726

  Fly   515 VESMRLYLLLPLYHEFVNSKHYKSLQVPFANAIFKLAENPRKV-LNKWLAQTPAEYFEHLVQNFL 578
            .|:.      ||:..|||.  :..:..|..:....:..|.|.| ||.  |.....:::..::.| 
 Worm   727 FENQ------PLFVRFVNL--FADITQPLPSGWECITMNNRTVFLNH--ANKETSFYDPRIRRF- 780

  Fly   579 HVVIHIISFKMGLAAASPSAERRQQLLPYNTELEIILKL--MKTLCQINNERHDRLNYQIFYWPD 641
                ...:.:.|.:..|.|:...:..:.:    .:|.|.  ::.:.|.|             :|.
 Worm   781 ----ETKTSRRGRSVPSRSSTAHKGKIDH----ALISKCEDLRKIAQDN-------------FPQ 824

  Fly   642 LSDYADVQ----QEYVKWIMADTARDFNICNYSFIFDQSAKTALLQADQALQMHSAMANAATMAF 702
            :::....:    :.:....:|..|.|.:|.....:.|.:.:....:.|.....:..|...     
 Worm   825 IAERISKKLMLIERFGGLAVASLANDLDITLALSMLDSNTEKLAGEGDNIKMFYEDMKKE----- 884

  Fly   703 SFFNYGMPISQFIVLNVTRENLVQDSLRELQHYSQSDLKKP-LKIKFHGEEAEDAGGVRKEFFML 766
               ..|...|: :...|:|:.|:.|:.|.:.:.....|||. |.|:|.||.|.|.||:.:|||:|
 Worm   885 ---KLGKGPSR-LCWKVSRDRLLDDAFRIILNVDPFVLKKSRLHIRFEGELALDYGGLSREFFIL 945

  Fly   767 LLKDLLDPKYGMFKEYEQSRL-LWFADLTFETENMYFLIGVLCG----LAIYNFTIINLPFPLAL 826
            |.::|..||.|.| |||.:.. |.......|||.....: :|||    ||:.:...|::.|....
 Worm   946 LSRELFHPKNGYF-EYEGNDYHLQLRPRGCETEKEKKWL-ILCGRVLALAVIHRCYIDVFFTNVF 1008

  Fly   827 FKKLLGKPVDLSDLRQLSPPEANSMQSLLDYQGDDFKEVFDL--TFEISRDVFGEAETKCLKPNG 889
            :|.|..:||.|.|.::.......||..||:      .:|.||  :|..|..|.|:...:.|.|.|
 Worm  1009 YKSLQKRPVTLMDFKESDAEFYKSMNWLLE------NDVVDLEMSFVYSSMVNGKLAEQELVPGG 1067

  Fly   890 NEIAVTLENRQEFVDLYVDFVFNKSVELHYNAFHKGFMKVCSGRVIHIFQPEELMAVVVGNEDYD 954
            ....||..|:.||:||.......:.||.........|.::.:..:::..:..:|..::.|:.:.|
 Worm  1068 ESQMVTEANKAEFIDLMCQKKAIRGVEKPLEILLTSFNQILNDNLLNSLESSDLKRILSGSLELD 1132

  Fly   955 WQALQDNCEYREGYTSVDDTIKWFWEVIHDMSEAEKKSFLLFLTGSDRIPIQGMKAL-------K 1012
            ....:.|..|:.||:.....::||||||..|:..|:...|||:|||..:|.:|..||       |
 Worm  1133 LNDWRTNTIYKGGYSDCHIVVEWFWEVIETMTNQERFDLLLFVTGSSSVPFEGFSALRGNEEISK 1197

  Fly  1013 LTIQPTPDERFLPVAHTCFNLLDLPRYKTKERLKYKLLQAIQQTQGFSL 1061
            ..|:...|....|.||||||.|.||.|.||::||.||.|||.....:|:
 Worm  1198 FCIEKWGDATSFPRAHTCFNRLQLPSYNTKQQLKSKLQQAIVNGMSYSI 1246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 RCC1 6..55 CDD:278826
RCC1 59..110 CDD:278826
RCC1 114..163 CDD:278826
RCC1 167..218 CDD:278826
RCC1 221..270 CDD:278826
RCC1 273..322 CDD:278826
RCC1_2 309..339 CDD:290274
RCC1 327..390 CDD:278826
HECTc 715..1060 CDD:238033 119/359 (33%)
HECTc 739..1059 CDD:214523 114/334 (34%)
hecw-1NP_001317872.1 FBA_2 230..285 CDD:311601
WW 603..634 CDD:197736
WW 746..777 CDD:197736 7/32 (22%)
HECTc 918..1244 CDD:214523 114/333 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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