DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Herc4 and Ube3b

DIOPT Version :9

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:NP_473434.2 Gene:Ube3b / 117146 MGIID:1891295 Length:1070 Species:Mus musculus


Alignment Length:905 Identity:192/905 - (21%)
Similarity:317/905 - (35%) Gaps:229/905 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 EFSVFLTN-----------EGGVFTCGAGAYGQLGHGFSSNEMLPRMVMELMGSTITQVACGNRH 318
            :|.|||.:           ||....|   ..|.|.|..|.:..|....|:...|.:||:.|..:.
Mouse   286 KFIVFLRDRDRCRDACESLEGCHTLC---LMGNLLHLGSLSLRLLEEEMDGFVSALTQMLCYCQK 347

  Fly   319 TLALVPSR-----------GRVYAFGLGSSGQLGTRSTKSLMLPQVVIGPWVSPSGSALLQSNDS 372
            .:|...|.           .:...:||..|..|.|:..:.|         |..|           
Mouse   348 YVAQKKSNLTHWHPVLGWFSQPVDYGLNDSMYLITKQLQFL---------WAVP----------- 392

  Fly   373 QVSLVIRQIFSGGDQSIVTTTLFVDKVP------PEDFRNYNPKSQILTL--------------- 416
                :||.:||    .|::..|.....|      |...:...|...:|..               
Mouse   393 ----LIRILFS----DILSRKLLEHAEPAPVQPQPSSPQTVLPVKSLLKRAFQKSASVRNILRPV 449

  Fly   417 ------TAEVTKQCAQCKQGLQSDMDLLSSIELIFRSQACWNGSFLLDHDRHFGCSVRNHGLDLK 475
                  :|||.|.|..|.. .|:.:..|:.|.|...:...:... ||.....|.|.:..||    
Mouse   450 GGRRVDSAEVRKVCNICVL-YQTSLTTLTQIRLQILTGLTYLDD-LLPKLWAFICELGPHG---- 508

  Fly   476 AAQLAFDNLRAVENESIRQVIWDNITKELVGSLV----CSP------ADVESMRLYLLLPLYHEF 530
            ..:|..:.|.....||          |:|:..|:    ||.      .|:|         :|.|.
Mouse   509 GLKLFLECLNNDTGES----------KQLLAMLMLFCDCSRHLITILDDIE---------VYEEQ 554

  Fly   531 VNSKHYKSLQV-PFANA-IFKLAENPRKVLNKWLAQTPAEYFEHLVQNFLHVVIHIISFKMGLAA 593
            ::.|..:.:.: .|.|: :||:.         |         :.:|:|.....:.:.....|...
Mouse   555 ISFKLEELVTISSFLNSFVFKMI---------W---------DGIVENAKGETLELFQSVHGWLM 601

  Fly   594 ASPSAERRQQLLPYNTELEIILKLMKTLCQINNERHDRLNYQIFYWPDLSDYADVQQEYVKWIMA 658
            .....:.|::..|.:..|...||......:::.:|.               .|.:..:::..::.
Mouse   602 VLYERDCRRRFAPEDHWLRRDLKPGVLFQELDKDRR---------------RAQLVLQHIPHVVP 651

  Fly   659 DTARDFNICNYSFIFDQSAKTALLQADQALQMHSAMANAATMAFSFFNYGMPISQFIV-LNVTRE 722
            ...|.....|  .:..:..|..|::...|                        |..:. :.:.|.
Mouse   652 HKNRVLLFRN--MVIKEKEKLGLVETSSA------------------------SPHVTHITIRRS 690

  Fly   723 NLVQDSLRELQHYSQSDLKKPLKIKFHG-----EEAEDAGGVRKEFFMLLLKDLLDPKYGMFKEY 782
            .:::|...:|:..||..:|..:::||..     |...|..||.|||...::|.:.||...:||..
Mouse   691 RMLEDGYEQLRQLSQHAMKGVIRVKFVNDLGVDEAGIDQDGVFKEFLEEIIKRVFDPALNLFKTT 755

  Fly   783 EQSRLLWFADLTFETEN---MYFLIGVLCGLAIYNFTIINLPFPLALFKKLLG-------KPVDL 837
            .....|:.:..::..||   ::..:|.:.|.|:|...::::||......::||       ..|| 
Mouse   756 SGDERLYPSPTSYIHENYLQLFEFVGKMLGKAVYEGIVVDVPFASFFLSQMLGHHHSVFYSSVD- 819

  Fly   838 SDLRQLSPPEANSMQSLLDYQGDDFKEVFD--LTFEISRDVFGEAETKCLKPNGNEIAVTLENRQ 900
             :|..|......::.|:..|.||    :.|  ||.....||.|:.....|.|.|..|.||.||:.
Mouse   820 -ELPSLDSEFYKNLTSIKRYDGD----IADLGLTLSYDEDVMGQLVCHELVPGGKTIPVTDENKI 879

  Fly   901 EFVDLYVDFVFNKSVELHYNAFHKGFMKVCSGRVIHIFQPEELMAVVVG-NEDYDWQALQDNCEY 964
            .::.|...|..:..::....|...||..:.....|.:|...||..::.| |.:.|.:.|:.:..|
Mouse   880 SYIHLMAHFRMHTQIKNQTAALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVY 944

  Fly   965 REGYTSVDDTIKWFWEVI-HDMSEAEKKSFLLFLTGSDRIPIQGMKALK---------------- 1012
            ..|:......|.|.|::: .|.:..|:..||.|:|...|.|:.|...||                
Mouse   945 YGGFHGSHRVIIWLWDILASDFTPEERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDT 1009

  Fly  1013 -----------LTIQPTPDERFLPVAHTCFNLLDLPRYKTKERLKYKLLQAIQQTQGFSL 1061
                       .||:.......||.:.||||||.||.|..|..|:.||..||....||.|
Mouse  1010 GDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAISMNTGFEL 1069

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 RCC1 6..55 CDD:278826
RCC1 59..110 CDD:278826
RCC1 114..163 CDD:278826
RCC1 167..218 CDD:278826
RCC1 221..270 CDD:278826 2/4 (50%)
RCC1 273..322 CDD:278826 13/48 (27%)
RCC1_2 309..339 CDD:290274 8/40 (20%)
RCC1 327..390 CDD:278826 12/62 (19%)
HECTc 715..1060 CDD:238033 102/391 (26%)
HECTc 739..1059 CDD:214523 96/365 (26%)
Ube3bNP_473434.2 HECTc 684..1068 CDD:238033 102/389 (26%)
HECTc 709..1067 CDD:214523 96/363 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.