DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Herc4 and hecw1

DIOPT Version :10

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:XP_017950053.1 Gene:hecw1 / 100170498 XenbaseID:XB-GENE-5969056 Length:1600 Species:Xenopus tropicalis


Alignment Length:371 Identity:116/371 - (31%)
Similarity:185/371 - (49%) Gaps:39/371 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   715 IVLNVTRENLVQDSLRELQHYSQSDLKK-PLKIKFHGEEAEDAGGVRKEFFMLLLKDLLDPKYGM 778
            |.|.:.|::|::.:..::..||:.:|:: .|.|.|.|||..|..|..:|||.||.::|.:|.||:
 Frog  1244 IKLIIRRDHLLEGTFNQVMAYSRKELQRNKLYITFVGEEGLDYSGPSREFFFLLSQELFNPYYGL 1308

  Fly   779 FKEYE----------------QSRLLWFADLTFETENMYFLIGVLCGLAIYNFTIINLPFPLALF 827
            | ||.                ::.|.||.           ..|.:.|||:.:..:::..|....:
 Frog  1309 F-EYSANDTYTVQISPMSAFVENHLEWFR-----------FSGRILGLALIHQYLLDAFFTRPFY 1361

  Fly   828 KKLLGKPVDLSDLRQLSPPEANSMQSLLDYQGDDFKEVFDLTFEISRDVFGEAETKCLKPNGNEI 892
            |.||..|.|||||..|......|:|.:.|   :|..::.||||.::.:|||:...:.||..|..|
 Frog  1362 KALLRLPCDLSDLEYLDEEFHQSLQWMKD---NDITDILDLTFTVNEEVFGQVTERELKSGGANI 1423

  Fly   893 AVTLENRQEFVDLYVDFVFNKSVELHYNAFHKGFMKVCSGRVIHIFQPEELMAVVVGNEDYDWQA 957
            .|:.:|::|:::..|.:...:.|.....|..:||.:|...|::.:|...||..|:.|..:.|...
 Frog  1424 QVSEKNKKEYIEKMVKWRVERGVVQQTEALVRGFYEVVDSRLVSVFDARELELVIAGTAEIDLND 1488

  Fly   958 LQDNCEYREGYTSVDDTIKWFWEVIHDMSEAEKKSFLLFLTGSDRIPIQGMKAL-------KLTI 1015
            .::|.|||.||......|:|||..:...:..::...|.|:||:..:|.:|..||       :..|
 Frog  1489 WRNNTEYRGGYHDGHIVIRWFWAAVERFNNEQRLRLLQFVTGTSSVPYEGFAALRGSNGLRRFCI 1553

  Fly  1016 QPTPDERFLPVAHTCFNLLDLPRYKTKERLKYKLLQAIQQTQGFSL 1061
            :.......||.||||||.||||.|.:...|..|||.|:::|..|.|
 Frog  1554 EKWGKITSLPRAHTCFNRLDLPPYPSYSMLHEKLLIAVEETSTFGL 1599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 ATS1 7..352 CDD:444065
RCC1 327..390 CDD:395335
HECTc 715..1060 CDD:238033 114/368 (31%)
hecw1XP_017950053.1 HECW_N 67..184 CDD:465177
C2_NEDL1-like 207..343 CDD:176073
PRK08581 576..>791 CDD:236304
Keratin_B2_2 680..710 CDD:464017
WW 832..861 CDD:459800
HECW1_helix 942..1008 CDD:465766
WW 1014..1045 CDD:197736
HECTc 1268..1597 CDD:214523 108/343 (31%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.