Sequence 1: | NP_001261249.1 | Gene: | Herc4 / 38151 | FlyBaseID: | FBgn0035207 | Length: | 1062 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001184011.1 | Gene: | Rcc1 / 100088 | MGIID: | 1913989 | Length: | 434 | Species: | Mus musculus |
Alignment Length: | 404 | Identity: | 123/404 - (30%) |
---|---|---|---|
Similarity: | 192/404 - (47%) | Gaps: | 55/404 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 11 GSTSHGQLGLGGIEDEQIL---TPSQIPWTPDTAVQQVACGHRHTLFLTATGKVYACGSNDYSQL 72
Fly 73 GHDLPTKRPRMSPFLLIPELQDYVIIQICCGSRHSLALSDWGQVLSWG---DNDCGQLGHATDKE 134
Fly 135 IVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNSPNDLTHCNYPLRLTT 199
Fly 200 LLGIPLAAIA---------------CGGNHSFLISKSGAVFGWGRNNCGQLGLNDETNRSYPTQL 249
Fly 250 KTLRTLGVRFV--ACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFSSNE-MLPRMVMELMGSTITQ 311
Fly 312 VACGNRHTLALVPSRGRVYAFGLGSSGQLGTRSTKSLMLPQVVIGPWVSPSGSALLQSNDSQVSL 376
Fly 377 VIRQIFSGGDQSIV 390 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Herc4 | NP_001261249.1 | RCC1 | 6..55 | CDD:278826 | 17/46 (37%) |
RCC1 | 59..110 | CDD:278826 | 18/50 (36%) | ||
RCC1 | 114..163 | CDD:278826 | 16/51 (31%) | ||
RCC1 | 167..218 | CDD:278826 | 16/65 (25%) | ||
RCC1 | 221..270 | CDD:278826 | 13/50 (26%) | ||
RCC1 | 273..322 | CDD:278826 | 15/49 (31%) | ||
RCC1_2 | 309..339 | CDD:290274 | 12/29 (41%) | ||
RCC1 | 327..390 | CDD:278826 | 19/62 (31%) | ||
HECTc | 715..1060 | CDD:238033 | |||
HECTc | 739..1059 | CDD:214523 | |||
Rcc1 | NP_001184011.1 | RCC1 | 48..95 | CDD:278826 | 17/46 (37%) |
RCC1 | 98..147 | CDD:278826 | 18/51 (35%) | ||
RCC1 | 150..200 | CDD:278826 | 16/52 (31%) | ||
RCC1_2 | 187..216 | CDD:290274 | 12/28 (43%) | ||
RCC1 | 203..268 | CDD:278826 | 16/66 (24%) | ||
RCC1 | 271..322 | CDD:278826 | 13/50 (26%) | ||
RCC1 | 325..368 | CDD:278826 | 15/44 (34%) | ||
RCC1 | 376..427 | CDD:278826 | 19/65 (29%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1062377at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |