DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rac1 and rnd3b

DIOPT Version :9

Sequence 1:NP_001261247.1 Gene:Rac1 / 38146 FlyBaseID:FBgn0010333 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_001002591.1 Gene:rnd3b / 436864 ZFINID:ZDB-GENE-040718-331 Length:223 Species:Danio rerio


Alignment Length:188 Identity:83/188 - (44%)
Similarity:112/188 - (59%) Gaps:8/188 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IKC--VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDR 66
            :||  |||||...|||.||..:..::||..|:||||:||:|:..||...:.|.||||:|...||.
Zfish     7 LKCKIVVVGDTQCGKTSLLNVFAKDSFPENYVPTVFENYTASFEVDTLRVELSLWDTSGSPYYDN 71

  Fly    67 LRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKNTIEKLRD 131
            :||||||..|..||||.:..|.:.|||..||..|:...||:|.|:|||.|.|||.|..|..:|.:
Zfish    72 VRPLSYPDADAVLICFDIGRPETLENVLRKWKGEIEEFCPNTKILLVGCKSDLRADLATFVQLSN 136

  Fly   132 KKLAPITYPQGLAMAKEIGAVKYLECSA-LTQKGLKTVFDEAIRSVLCPVLQPKSKRK 188
            .  .|.:|.||..|||.|.| .|:|||| .::..::.:|.  |.::.|.....||.::
Zfish   137 D--IPSSYDQGSNMAKLISA-PYIECSAQQSENSVRDIFH--IATLACVSKNNKSVKR 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rac1NP_001261247.1 Rac1_like 3..176 CDD:206663 80/174 (46%)
rnd3bNP_001002591.1 P-loop_NTPase 4..182 CDD:304359 81/179 (45%)
RHO 11..182 CDD:197554 79/175 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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