DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rac1 and Rhobtb3

DIOPT Version :9

Sequence 1:NP_001261247.1 Gene:Rac1 / 38146 FlyBaseID:FBgn0010333 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_001101115.1 Gene:Rhobtb3 / 309922 RGDID:1311683 Length:611 Species:Rattus norvegicus


Alignment Length:199 Identity:46/199 - (23%)
Similarity:80/199 - (40%) Gaps:43/199 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPI--NLGLWDTAGQEDYDRLRP 69
            :|.||.:   :.||.:.:|.|.|      ||..|.|:...:.|.:  :..:||....:.|.....
  Rat    34 LVSGDES---SLLLNAASTVARP------VFTEYQASAFGNVKLVVHDCPVWDIFDSDWYTSRNL 89

  Fly    70 LSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIIL--VGTKLDLRDDKNTIEKLRDK 132
            :.  ..|:.:|.:::.:..||..|:..:.|.::....|.|:|:  |||              |..
  Rat    90 IG--GADIIVIKYNVNDKFSFHEVKDNYIPVIKRASNSVPVIIAAVGT--------------RQN 138

  Fly   133 KLAPITYP-------------QGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRSVLCPVLQPK 184
            :..|.|.|             :|:.:|||:||. |||..:|....:...|...:...:...|..|
  Rat   139 EELPCTCPLCTSDRGSCVTTTEGIQLAKELGAT-YLELHSLDDFYIGKYFGGVLEYFMIQALNQK 202

  Fly   185 SKRK 188
            :..|
  Rat   203 ASEK 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rac1NP_001261247.1 Rac1_like 3..176 CDD:206663 43/185 (23%)
Rhobtb3NP_001101115.1 P-loop_NTPase 34..174 CDD:304359 39/165 (24%)
BTB 413..515 CDD:279045
BTB 421..518 CDD:197585
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24072
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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