DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rac1 and Rhobtb2

DIOPT Version :9

Sequence 1:NP_001261247.1 Gene:Rac1 / 38146 FlyBaseID:FBgn0010333 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_001013151.1 Gene:Rhobtb2 / 306004 RGDID:1309924 Length:728 Species:Rattus norvegicus


Alignment Length:229 Identity:85/229 - (37%)
Similarity:119/229 - (51%) Gaps:48/229 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY------IPTVF--DNY--------SANVMVDAK 49
            ::.||||||||.|||||.|:.:...||...:|      :|||:  |.|        .:..:||..
  Rat    12 VETIKCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDDV 76

  Fly    50 PINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVG 114
            .::|.||||.|  |:.:.|..:|.::||.::|||:.||.|..:|:..||||::|.||..|:||||
  Rat    77 SVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIANPNSLHHVKTMWYPEIKHFCPRAPVILVG 139

  Fly   115 TKLDLR-DDKNTIEKLRDKKLAPI----TYP--QGLAMAKEIGAVKYLECSALTQKGLKTVFDEA 172
            .:|||| .|...:.:.|.....||    ..|  :|..:|||:| :.|.|.|.:.|.|:|.|||.|
  Rat   140 CQLDLRYADLEAVNRARRPLARPIKPNEILPPEKGREVAKELG-IPYYETSVVAQFGIKDVFDNA 203

  Fly   173 IRSVL----------------------CPVLQPK 184
            ||:.|                      .|.|.||
  Rat   204 IRAALISRRHLQFWKSHLRNVQRPLLQAPFLPPK 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rac1NP_001261247.1 Rac1_like 3..176 CDD:206663 80/195 (41%)
Rhobtb2NP_001013151.1 RhoBTB 13..207 CDD:133275 80/196 (41%)
BTB_POZ 250..475 CDD:365784
BTB2_POZ_RHOBTB2 480..603 CDD:349668
BACK_RHOBTB2 608..704 CDD:350606
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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