DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rac1 and rhoh

DIOPT Version :9

Sequence 1:NP_001261247.1 Gene:Rac1 / 38146 FlyBaseID:FBgn0010333 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_001120435.1 Gene:rhoh / 100145522 XenbaseID:XB-GENE-950965 Length:190 Species:Xenopus tropicalis


Alignment Length:177 Identity:80/177 - (45%)
Similarity:114/177 - (64%) Gaps:7/177 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYD 65
            |.:||||:|||.|||||.||:.:|:.|||..|.|||::|...:|.:|...|:||||||||.:.:.
 Frog     1 MNSIKCVLVGDAAVGKTALLVRFTSEAFPDSYRPTVYENTGVDVYMDGVQISLGLWDTAGNDAFR 65

  Fly    66 RLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKNTIEKLR 130
            .:||||....|:.|:|||:.|..||.|||.||..|||.|.|..|:::|.|:.|.|:       |.
 Frog    66 SIRPLSLQNADIVLLCFSVANHTSFLNVRNKWIGEVRQHLPRIPVLVVATQTDQRE-------LD 123

  Fly   131 DKKLAPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRSVL 177
            ..:|..|....|..:|:::.|..|||||||:.:|::.||:.|:|:.:
 Frog   124 HMRLPCINSIDGKQLAQDVRAKGYLECSALSNRGVQQVFECAVRTAI 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rac1NP_001261247.1 Rac1_like 3..176 CDD:206663 79/172 (46%)
rhohNP_001120435.1 Rho 4..168 CDD:206641 78/170 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1091615at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24072
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

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