DRSC/TRiP Functional Genomics Resources

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Protein Alignment scf and Rcn3

DIOPT Version :9

Sequence 1:NP_477392.1 Gene:scf / 38145 FlyBaseID:FBgn0025682 Length:329 Species:Drosophila melanogaster
Sequence 2:NP_001008694.1 Gene:Rcn3 / 494125 RGDID:1359365 Length:328 Species:Rattus norvegicus


Alignment Length:334 Identity:148/334 - (44%)
Similarity:205/334 - (61%) Gaps:15/334 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MARTRIQMLLLVVALTAVISGASASSIPEELPH--NPLEH-DPLHPRHFDGGEHNAQFDHEAFLG 62
            |.|..:.:|||::...|:     ....|:..||  :.:.| .||.....|....|.|:|||||||
  Rat     2 MWRWTLMLLLLLLRHWAL-----GKPSPDAGPHGQDRVHHGTPLSEAPHDDAHGNFQYDHEAFLG 61

  Fly    63 PDESKKFDSLTPEESRRRLGVIVDRID--ENKDGSVTLAELKNWIAYTQRRYIEEDVGRVWKQHN 125
            .|.:|:||.||||||:.|||.||||:|  .:.||.|:||||:.|||:||:|:|.:.|...|..::
  Rat    62 RDVAKEFDQLTPEESQARLGRIVDRMDLAGDSDGWVSLAELRAWIAHTQQRHIRDSVSAAWHTYD 126

  Fly   126 PDNNETISWDSYMQTVYGFMDDLSPDEKEQE-ENGVSYKSLLKRDRYRWSVADQDLDDNLTKDEF 189
            .|.:..:.|:......||..:   |.|:..: |:..:||.:|.||..|:.|||||.|...|::|.
  Rat   127 TDRDGRVGWEELRNATYGHYE---PGEEFHDVEDAETYKKMLARDERRFRVADQDGDSMATREEL 188

  Fly   190 TAFLHPEDHPSMKGVVLRETITDLDKDHDGKISVDEYIGDMYRSTGAEDEEPEWVANEREAFSTH 254
            |||||||:.|.|:.:|:.||:.||||:.||.:.|:|||.|:|.:...| |||.||..||:.|...
  Rat   189 TAFLHPEEFPHMRDIVVAETLEDLDKNKDGYVQVEEYIADLYSAEPGE-EEPAWVQTERQQFRDF 252

  Fly   255 RDLDKDGYLNEEEVKQWIAPHDFDHSEAEAKHLLFEADADHDDKLTKEEILDKYDVFVGSQATDF 319
            |||:|||.|:..||..|:.|...|....||.|||.|:|.|.|.:|:|.|||..:::|||||||::
  Rat   253 RDLNKDGRLDGSEVGYWVLPPSQDQPLVEANHLLHESDTDKDGRLSKAEILSNWNMFVGSQATNY 317

  Fly   320 GEALARHDE 328
            ||.|.||.:
  Rat   318 GEDLTRHHD 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scfNP_477392.1 EF-hand_7 170..227 CDD:290234 29/56 (52%)
EFh 206..273 CDD:238008 33/66 (50%)
EF-hand_7 248..308 CDD:290234 28/59 (47%)
EFh 248..306 CDD:298682 27/57 (47%)
Rcn3NP_001008694.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 24..48 7/23 (30%)
EFh_CREC_RCN3 44..311 CDD:320028 125/270 (46%)
EF-hand motif 44..73 CDD:320028 15/28 (54%)
EF-hand motif 79..110 CDD:320028 18/30 (60%)
EF-hand motif 117..146 CDD:320028 6/28 (21%)
EF-hand motif 167..196 CDD:320028 17/28 (61%)
EF-hand motif 204..233 CDD:320028 15/28 (54%)
EF-hand motif 245..274 CDD:320028 14/28 (50%)
EF-hand motif 281..311 CDD:320028 15/29 (52%)
Prevents secretion from ER. /evidence=ECO:0000255|PROSITE-ProRule:PRU10138 325..328 0/2 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340817
Domainoid 1 1.000 59 1.000 Domainoid score I10385
eggNOG 1 0.900 - - E1_KOG4223
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D372250at33208
OrthoFinder 1 1.000 - - FOG0000638
OrthoInspector 1 1.000 - - otm44637
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1088
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.710

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