DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scf and calu

DIOPT Version :9

Sequence 1:NP_477392.1 Gene:scf / 38145 FlyBaseID:FBgn0025682 Length:329 Species:Drosophila melanogaster
Sequence 2:NP_998840.1 Gene:calu / 407965 XenbaseID:XB-GENE-1007422 Length:315 Species:Xenopus tropicalis


Alignment Length:327 Identity:162/327 - (49%)
Similarity:218/327 - (66%) Gaps:15/327 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TRIQMLLLVVALTAVISGASASSIPEELPHNPLEHDPLHPRHFDGGEHNAQFDHEAFLGPDESKK 68
            ||..:|.|.:.:..|:|.      |.| ..:.:.|||...........|..:||:||||.:|:|.
 Frog     3 TRRLLLCLCLWVACVVSK------PTE-KKDRVHHDPQLSEKVHDDAQNFDYDHDAFLGAEEAKT 60

  Fly    69 FDSLTPEESRRRLGVIVDRIDENKDGSVTLAELKNWIAYTQRRYIEEDVGRVWKQHNPDNNETIS 133
            ||.||||||:.|||.||.:||.:|||.||:.||::||.:.|:|:|.|||.|.||.|:.:.:..:|
 Frog    61 FDQLTPEESKERLGRIVGKIDADKDGYVTVNELRDWIIFAQKRWIYEDVERQWKGHDLNGDSMVS 125

  Fly   134 WDSYMQTVYGF-MDDLSPDEKEQEENGVSYKSLLKRDRYRWSVADQDLDDNLTKDEFTAFLHPED 197
            |:.|....||: :||..||      |..:||.::.||..|:.:||||.|...||:|||||||||:
 Frog   126 WEEYKNATYGYILDDPDPD------NSFNYKQMMVRDERRFKMADQDGDLIATKEEFTAFLHPEE 184

  Fly   198 HPSMKGVVLRETITDLDKDHDGKISVDEYIGDMYRSTGAEDEEPEWVANEREAFSTHRDLDKDGY 262
            ...||.:|:.||:.|:||:.||.|.::|||||||...| :..|||||..|||.|...||.:.||.
 Frog   185 FDYMKDIVVLETMEDIDKNGDGLIDLEEYIGDMYNHDG-DANEPEWVKTEREQFVEFRDKNHDGK 248

  Fly   263 LNEEEVKQWIAPHDFDHSEAEAKHLLFEADADHDDKLTKEEILDKYDVFVGSQATDFGEALARHD 327
            :::||.|.||.|.|:||:|||::||::|:|.:.|.|||:|||:||||:|||||||||||||.|||
 Frog   249 MDKEETKDWILPSDYDHAEAESRHLVYESDQNKDSKLTREEIVDKYDLFVGSQATDFGEALVRHD 313

  Fly   328 EF 329
            ||
 Frog   314 EF 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scfNP_477392.1 EF-hand_7 170..227 CDD:290234 29/56 (52%)
EFh 206..273 CDD:238008 33/66 (50%)
EF-hand_7 248..308 CDD:290234 31/59 (53%)
EFh 248..306 CDD:298682 30/57 (53%)
caluNP_998840.1 EFh_CREC_Calumenin 37..299 CDD:320026 134/268 (50%)
EF-hand motif 37..66 CDD:320026 12/28 (43%)
EF-hand motif 72..101 CDD:320026 16/28 (57%)
EF-hand motif 108..137 CDD:320026 11/28 (39%)
EF-hand motif 155..184 CDD:320026 18/28 (64%)
EF-hand motif 192..221 CDD:320026 16/28 (57%)
EF-hand motif 233..262 CDD:320026 14/28 (50%)
EF-hand motif 269..299 CDD:320026 17/29 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 139 1.000 Domainoid score I4781
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H936
Inparanoid 1 1.050 307 1.000 Inparanoid score I2588
OMA 1 1.010 - - QHG48619
OrthoDB 1 1.010 - - D372250at33208
OrthoFinder 1 1.000 - - FOG0000638
OrthoInspector 1 1.000 - - otm47679
Panther 1 1.100 - - LDO PTHR10827
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3115
SonicParanoid 1 1.000 - - X1088
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

Return to query results.
Submit another query.