DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rabex-5 and VPS9

DIOPT Version :9

Sequence 1:NP_612093.1 Gene:Rabex-5 / 38144 FlyBaseID:FBgn0262937 Length:696 Species:Drosophila melanogaster
Sequence 2:NP_013612.1 Gene:VPS9 / 854876 SGDID:S000004563 Length:451 Species:Saccharomyces cerevisiae


Alignment Length:405 Identity:100/405 - (24%)
Similarity:163/405 - (40%) Gaps:72/405 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 FLLQLRQLRIPDDGKRKLKLEIQRLDSDIRKYMNGNGGKNINELSDLVQNAYTKVSDIVHNDPSF 199
            |.:.::||:.|  |...|   ::...|.:|.::.......::|...|:.:..|.:.|.......|
Yeast    63 FQIFIKQLQTP--GADPL---VKYTKSFLRNFLAQRLLWTVSEEIKLISDFKTFIYDKFTLYEPF 122

  Fly   200 EIATNEDRDSAIDFFEKVVMTQNHKFLFSPYF------------TTDEDSDVKVQKRIRQLSWIT 252
            ....|....:|.:..||::|.:.:...|||..            ..|..:|..:.::||...:|:
Yeast   123 RSLDNSKMRNAKEGMEKLIMGKLYSRCFSPSLYEILQKPLDDEHMKDLTNDDTLLEKIRHYRFIS 187

  Fly   253 AKHLDCSIDEVNSEARDLVYNAISELVGIDSYYSPQEKLQCTWRCCRHIFELLKRATGGPASADD 317
            ...||......|:.....|:.|..||..|:.:.||::|:.|.....:.||.|||........||.
Yeast   188 PIMLDIPDTMPNARLNKFVHLASKELGKINRFKSPRDKMVCVLNASKVIFGLLKHTKLEQNGADS 252

  Fly   318 FLPALIFVVLKANPVRLHSNINFVTRFTNASRLMSGESGYYFTNLCSAIAFIENLNGESLGVSS- 381
            |:|.||:.:||.....|.||:|::.||.:.. .:.||..||.::|.:|:.||.||...||.:.. 
Yeast   253 FIPVLIYCILKGQVRYLVSNVNYIERFRSPD-FIRGEEEYYLSSLQAALNFIMNLTERSLTIEDH 316

  Fly   382 EEFEALMSGQQPYSTPWESALLACESLHLISENMKRME---------------------MLQKRN 425
            |:||      :.|...::.  ||.|...  .|..|::|                     ::.|.|
Yeast   317 EDFE------EAYQRNFKQ--LAEEKEE--EEKKKQLEIPDELQPNGTLLKPLDEVTNIVISKFN 371

  Fly   426 ALISS-GITSFEKELIDFQREVTERVDTVIAKAP-----------LNLLPIKTPAFL-------- 470
            .|.|. |..:.|:.|...|....|.|.::|.|..           .|:.|...|:.:        
Yeast   372 ELFSPIGEPTQEEALKSEQSNKEEDVSSLIKKIEENERKDTLNTLQNMFPDMDPSLIEDVCIAKK 436

  Fly   471 --IGQARAHLLNESE 483
              ||.....||:.||
Yeast   437 SRIGPCVDALLSLSE 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rabex-5NP_612093.1 zf-A20 17..40 CDD:280010
VPS9 274..373 CDD:280383 36/98 (37%)
VPS9NP_013612.1 DUF5601 80..146 CDD:407982 12/65 (18%)
VPS9 205..321 CDD:128469 43/122 (35%)
CUE_VPS9_like 408..449 CDD:270552 7/40 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344443
Domainoid 1 1.000 66 1.000 Domainoid score I2380
eggNOG 1 0.900 - - E2759_KOG2319
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3044
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002652
OrthoInspector 1 1.000 - - oto99053
orthoMCL 1 0.900 - - OOG6_102142
Panther 1 1.100 - - LDO PTHR23101
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1663
SonicParanoid 1 1.000 - - X2025
TreeFam 00.000 Not matched by this tool.
1110.720

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