DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rabex-5 and AT1G12440

DIOPT Version :10

Sequence 1:NP_612093.1 Gene:Rabex-5 / 38144 FlyBaseID:FBgn0262937 Length:696 Species:Drosophila melanogaster
Sequence 2:NP_172706.1 Gene:AT1G12440 / 837801 AraportID:AT1G12440 Length:168 Species:Arabidopsis thaliana


Alignment Length:86 Identity:27/86 - (31%)
Similarity:35/86 - (40%) Gaps:29/86 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 STAARPPSLRLGQQDLKCRSGCGFYGTPQNEGLCSMCFRE-----------------KFNDKQRK 49
            ||:..|...:|      |..||||:|:|.|..|||.|:|:                 ..|..:.|
plant     8 STSFSPSEPKL------CVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPNKPK 66

  Fly    50 LKQ------TGGETGPGSSSS 64
            .:.      |.|..|.|||||
plant    67 TQPQQSQEITQGVLGSGSSSS 87

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rabex-5NP_612093.1 zf-A20 17..40 CDD:460313 12/22 (55%)
DUF5601 163..220 CDD:465668
VPS9 274..373 CDD:460489
AT1G12440NP_172706.1 zf-A20 17..40 CDD:460313 13/28 (46%)
ZnF_AN1 109..146 CDD:197545
Blue background indicates that the domain is not in the aligned region.

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