DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rabex-5 and Vps9d1

DIOPT Version :10

Sequence 1:NP_612093.1 Gene:Rabex-5 / 38144 FlyBaseID:FBgn0262937 Length:696 Species:Drosophila melanogaster
Sequence 2:NP_001297590.1 Gene:Vps9d1 / 72325 MGIID:1914143 Length:650 Species:Mus musculus


Alignment Length:342 Identity:83/342 - (24%)
Similarity:128/342 - (37%) Gaps:81/342 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 GPGSSSSVATLDRRSPQHAHLQGKVEQQVRKPSDKEQDNLGTLQKKKFTAVLQKTLQAG-AQKIT 121
            ||..:.||.||      |:           .|.|:|.|.                ..|| :..:.
Mouse   358 GPPPTPSVPTL------HS-----------GPLDREADG----------------SPAGPSSPLV 389

  Fly   122 QQRGHVPDPTEG-----QFLLQLRQLRIPDDGKRKLKLEIQRLDSDIRKYMNGNGGKNINELSDL 181
            ....|:||....     || |.:.:.:.| ..||:..||.  |.|.::...|.     |:.|..|
Mouse   390 DALSHLPDKDSSFEDLEQF-LAMSEPQTP-GAKREPLLEC--LKSTVKDIHNA-----IDRLLSL 445

  Fly   182 VQNAYTKVSDIVHNDPSFEIATNEDRDSAIDFFEKVVMTQNHKFLFSPYFTTDEDSDVKVQK--R 244
            ...|:          .|...||::||  .:...|:...:.....|.:.|.:.....:..|.:  .
Mouse   446 TLLAF----------ESLNTATSKDR--CLACIEEPFFSPLWPLLLALYRSVHRTREAAVSRSME 498

  Fly   245 IRQLSWITAKHLDCSIDEVNSEARDLVY---NAISELVGIDSYYSPQEKLQCTWRCCRHIF---- 302
            :.:.:..||..:...:.....||:...|   .|..||..:.....||:||:|..|..|.|.    
Mouse   499 LYRNAPPTALGIPTKLLPRVPEAQASTYPYCTAAQELGLLVLESCPQKKLECIVRTLRVICICAE 563

  Fly   303 ------ELLKRATGGP-----ASADDFLPALIFVVLKANPVRLHSNINFVTRFTNASRLMSGESG 356
                  |........|     :.|||.||.|.||||::...:|.|....:..||:...|: ||.|
Mouse   564 DYCRAQEARPEGESQPPAAAISGADDLLPILSFVVLRSGLPQLVSECAALEEFTHEGYLI-GEEG 627

  Fly   357 YYFTNLCSAIAFIENLN 373
            |..|:|.||::::|.|:
Mouse   628 YCLTSLQSALSYVELLS 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rabex-5NP_612093.1 zf-A20 17..40 CDD:460313
DUF5601 163..220 CDD:465668 11/56 (20%)
VPS9 274..373 CDD:460489 37/113 (33%)
Vps9d1NP_001297590.1 MIT 13..82 CDD:461228
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 348..393 13/67 (19%)
VPS9 528..644 CDD:460489 37/116 (32%)
Blue background indicates that the domain is not in the aligned region.

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