DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rabex-5 and Y39A1A.24

DIOPT Version :9

Sequence 1:NP_612093.1 Gene:Rabex-5 / 38144 FlyBaseID:FBgn0262937 Length:696 Species:Drosophila melanogaster
Sequence 2:NP_001379032.1 Gene:Y39A1A.24 / 3564902 WormBaseID:WBGene00012660 Length:126 Species:Caenorhabditis elegans


Alignment Length:80 Identity:19/80 - (23%)
Similarity:33/80 - (41%) Gaps:19/80 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 KQTGGET----------GPGSSSSVATLDRRSPQHAHLQGKVE--QQVRKPSDKEQDNLGTLQKK 103
            ||..|.|          .|...::.|:..|.||..|.:: |.|  :|.|:|..:.:.:      .
 Worm    53 KQAAGNTVSASKRGSTQSPVIRTAEASTQRASPAIAQVE-KFESVRQPREPRSRSKHH------A 110

  Fly   104 KFTAVLQKTLQAGAQ 118
            |..:.:...|:|.:|
 Worm   111 KHRSKMDSALKAASQ 125

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rabex-5NP_612093.1 zf-A20 17..40 CDD:280010
VPS9 274..373 CDD:280383
Y39A1A.24NP_001379032.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2319
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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