DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rabex-5 and Zfand4

DIOPT Version :10

Sequence 1:NP_612093.1 Gene:Rabex-5 / 38144 FlyBaseID:FBgn0262937 Length:696 Species:Drosophila melanogaster
Sequence 2:XP_038963095.1 Gene:Zfand4 / 286998 RGDID:628707 Length:815 Species:Rattus norvegicus


Alignment Length:425 Identity:86/425 - (20%)
Similarity:130/425 - (30%) Gaps:151/425 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 VKVQKRIRQLSWITAKHLDCSIDEV------NSEARDLVYNAISELVGIDSYYSPQEKLQCTWRC 297
            |.|:..:|:|    |:::|.|.|||      |.:...|||....:|                   
  Rat   154 VPVEDPLREL----AEYMDSSRDEVWEKTSCNKQVTFLVYREGDQL------------------- 195

  Fly   298 CRHIFELLKRATGGPASADDFLPALIFVVLKANPVRLHSNINFVTRFTNASRLMSGESGYYFTNL 362
              :.|.::.|..|                                ..|..|..:||.|.|     
  Rat   196 --NFFRVVDRGDG--------------------------------TLTPLSESLSGGSVY----- 221

  Fly   363 CSAIAFIENLNGESLGVSSEEFEALMSGQQPYSTPWESALLACESLHLISENMKRMEMLQKRNAL 427
                    ||..:    ..||.|...||||.....     :....:.|:...|:.|.:.:|    
  Rat   222 --------NLYTD----EDEETEPSPSGQQIIENS-----ITMNKMKLLKAKMENMNLSKK---- 265

  Fly   428 ISSGITSFEKELIDFQREVTERVDTVIAKAPLNLLPIKTPAFLIGQARAHLLNESEAGHYQANML 492
                               .::|..|..:.|:...|..:.|   ..||..||.  ...|...:.|
  Rat   266 -------------------PKKVVKVKPRPPIAPRPSSSSA---AAARHRLLR--VLPHIGQSCL 306

  Fly   493 HGGSL----TSQSLTAAGGLVKPAAASKESGLS--LKDTSMSSMGRLSPLQQNVQPADHLFASPI 551
            ..|:.    ||::...:.....||.....|..|  |||........||....:::....|....:
  Rat   307 PSGNAYVPETSRNAGTSSAAQAPADRPMPSLRSELLKDDGNWERNMLSHSTSSIRLLPQLTHLDL 371

  Fly   552 FNYTAFDAVSLLEEPVPDANTDVLMLGS-------EFQGGLTNINYDFDLSDQSGENSTADESKL 609
            .|          ::.:||:   ||.|||       ...|.|::.|.:..:.....|...|||..|
  Rat   372 EN----------DKELPDS---VLHLGSSLPRRTKHLSGNLSSNNEEDVVLFPRSEECVADELLL 423

  Fly   610 -NLDEFDPLAQ----------KGLVAKPPPPLPET 633
             .:..|.|.|:          :|| .|..|..|.|
  Rat   424 PEVGPFAPFAEGNGAEQSSGVEGL-GKVTPEFPLT 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rabex-5NP_612093.1 zf-A20 17..40 CDD:460313
DUF5601 163..220 CDD:465668
VPS9 274..373 CDD:460489 11/98 (11%)
Zfand4XP_038963095.1 Ubl_ZFAND4 72..145 CDD:340500
Blue background indicates that the domain is not in the aligned region.

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