DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rabex-5 and muk1

DIOPT Version :10

Sequence 1:NP_612093.1 Gene:Rabex-5 / 38144 FlyBaseID:FBgn0262937 Length:696 Species:Drosophila melanogaster
Sequence 2:NP_001342780.1 Gene:muk1 / 2540384 PomBaseID:SPBC29A10.11C Length:402 Species:Schizosaccharomyces pombe


Alignment Length:389 Identity:81/389 - (20%)
Similarity:136/389 - (34%) Gaps:144/389 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 PGSSSSVATLDRR----------SPQHAHL-----QGKVEQQVRKPSDKEQDNLGTLQKKKFTAV 108
            |.|:|::.|..:.          ||.|..|     ..|..|...|.:|:               .
pombe    24 PNSASNLPTTVQACVIQFISSLVSPVHPQLLSPEELAKAFQNFYKHTDE---------------F 73

  Fly   109 LQKTLQAGAQKITQQRGHVPDPTEGQFLLQLRQLRIPD--DGKRKLKLEIQRLDSDIRKYMNGNG 171
            :..||             :|.|:...   |...|..|:  |.::|           .|:::....
pombe    74 IASTL-------------IPQPSSKD---QNVPLLFPEEIDAQKK-----------ARQHLLNQK 111

  Fly   172 GKNINELSDLV-QNAYTKVSDIVHNDPSFEIATNED--RDSAIDFFEKVVMTQNHKFLFSPYFTT 233
            .:.::::.|:| :..|.::         |.::|:.|  :|   |..:|.:.::..|.|.:.....
pombe   112 DEWMDQIEDIVCEYLYDRI---------FCLSTSTDAAKD---DLLKKFIASEEKKELINCIPIP 164

  Fly   234 DEDSDVKVQKRIRQLSWITAKHLDCSIDE-------------VNSEARDLVYNAISELVGIDSYY 285
            |   |.|:..|:.::|     ....::||             |||.    :.|| |:|       
pombe   165 D---DEKLTNRLHEVS-----EAFFALDEQHTPRSKINTFMTVNSS----ILNA-SQL------- 209

  Fly   286 SPQEKLQCTWRCCRHIFELLKRATGGPASADDFLPALIFVVLKANPVRLHSNINFVTRFTNASRL 350
             |||:|                      :||..|...|:.:|......|.|::|||.||.||. .
pombe   210 -PQEEL----------------------NADSLLNLTIYCILCYPGFHLISHLNFVLRFRNAD-F 250

  Fly   351 MSGESGYYFTNLCSAIAFI-----ENLNGESLGVSSEEFEALMSGQQPYSTPWESALLACESLH 409
            :|||..|..|...:|:.||     ..|...|:..|.:.....::..:..||        ..|||
pombe   251 LSGEQRYCLTTFEAALTFILRACPNLLTQSSIQPSDDPLSLEVANSETVST--------SNSLH 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rabex-5NP_612093.1 zf-A20 17..40 CDD:460313
DUF5601 163..220 CDD:465668 10/59 (17%)
VPS9 274..373 CDD:460489 29/103 (28%)
muk1NP_001342780.1 VPS9 173..274 CDD:460489 36/141 (26%)
Blue background indicates that the domain is not in the aligned region.

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