DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rabex-5 and Rin3

DIOPT Version :10

Sequence 1:NP_612093.1 Gene:Rabex-5 / 38144 FlyBaseID:FBgn0262937 Length:696 Species:Drosophila melanogaster
Sequence 2:NP_808288.2 Gene:Rin3 / 217835 MGIID:2385708 Length:980 Species:Mus musculus


Alignment Length:398 Identity:77/398 - (19%)
Similarity:145/398 - (36%) Gaps:97/398 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PSLRLGQQDLKCRSGCGFYGTPQNEGLCSMCFREKFNDKQRKLKQTGGETGPGSSSSVATLDRRS 72
            |..:.|.|.|:.:|.    ..||:.        .:|...|..|..:.|.  |.|::.        
Mouse   502 PVRQAGMQHLQVQSS----SCPQSS--------PEFKGSQASLSDSLGV--PASAAD-------- 544

  Fly    73 PQHAHLQGKVEQQV--------RKPS---DKEQDNLGTLQ-KKKFTAVL-------QKTLQAGAQ 118
             |.::.....|:::        :|||   ||.:..|..:. ...|.|.|       :|.::....
Mouse   545 -QDSYSTSSAEEELEFSSPNVKKKPSMILDKARHRLSFVSFASVFHAFLSSDRKLYKKVVELAQD 608

  Fly   119 KITQQRGHVPDPTEGQFLLQLRQLRIPDDGKRKLKLEIQRLDSDIRKYMNGNGGKNINELSDLVQ 183
            |.:.....|.|.......:..||     ....::..||:.:.:.::.|              |:|
Mouse   609 KSSYFGSLVQDYKVYSLEMMARQ-----TSSTEMLQEIRTMMTQLKSY--------------LLQ 654

  Fly   184 NAYTK--VSDIVHNDPSFEIATNEDRDSAIDFFEKVVMTQNHKFLFSPYFTTDEDSDVKVQKRIR 246
            :...|  |...:|::               :..|.:|.:..:|.:..|.......|.:::..|..
Mouse   655 STELKALVEPTLHSE---------------EELEAIVESALYKCVLKPLKEAINSSLLEIHSRDG 704

  Fly   247 QLSWITAKHL------------DCSIDEVNSEARDLVYNAISELVGIDSYYSPQEKLQCTWRCCR 299
            .|..:....|            ..|:.||     .::...:.:|..:...|||.:|:....:.|:
Mouse   705 SLQQLKENQLVVLATTTTDLGVTTSVPEV-----AVMEKILQKLTSMHKAYSPGKKISILLKTCK 764

  Fly   300 HIFELLKRAT-GGPASADDFLPALIFVVLKANPVRLHSNINFVTRFTNASRLMSGESGYYFTNLC 363
            .|::.:.... |.|..||||||.|::|:.::|...:..|:.::....:.: |..||..||.|...
Mouse   765 LIYDSMALGNPGKPYGADDFLPVLMYVLARSNLTEMLLNVEYMMELMDPA-LQLGEGSYYLTTTY 828

  Fly   364 SAIAFIEN 371
            .|:..|:|
Mouse   829 GALEHIKN 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rabex-5NP_612093.1 zf-A20 17..40 CDD:460313 4/22 (18%)
DUF5601 163..220 CDD:465668 8/58 (14%)
VPS9 274..373 CDD:460489 28/99 (28%)
Rin3NP_808288.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..40
SH2_RIN3 52..153 CDD:198258
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 247..496
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 509..560 13/73 (18%)
Interaction with RAB5B. /evidence=ECO:0000250 584..729 25/178 (14%)
VPS9 736..839 CDD:460489 28/102 (27%)
Ubl1_cv_Nsp3_N-like 874..961 CDD:475130
Blue background indicates that the domain is not in the aligned region.

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