DRSC/TRiP Functional Genomics Resources

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Protein Alignment tfc and LOC688858

DIOPT Version :9

Sequence 1:NP_612091.1 Gene:tfc / 38141 FlyBaseID:FBgn0035199 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_038945829.1 Gene:LOC688858 / 688858 RGDID:1584108 Length:207 Species:Rattus norvegicus


Alignment Length:179 Identity:50/179 - (27%)
Similarity:77/179 - (43%) Gaps:48/179 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 RDPSE--NE------------VDNDCPNCVDESQYTPNKWTMPLLKLGEKRYYLGIFFKA--NWF 261
            :|||.  ||            ||:.|..|       |.:||.    ...:.||   |.|:  ||.
  Rat    49 KDPSSSVNEKIYKQLMQLGIGVDSLCRPC-------PWEWTF----FHGRCYY---FSKSQRNWN 99

  Fly   262 KATQYCRYHGMHLASISSQEENDRLEKHIRDFGLGHEHFWISGTDLADEGNFFWMATGRPITFT- 325
            .:...|:.....|.::.|.||...|:..:::.|..    |:..:||..|..:.|: .|.|::.: 
  Rat   100 DSVAACQEVDAQLVTVESDEEQTFLDTFLKNKGPA----WMGLSDLKQESTWQWV-DGSPLSDSF 159

  Fly   326 --NWNAGEPNNFRYENGEEENCLELWNRDGKGLKWNDSPCSFETYFVCE 372
              .|..|||||    .|.|: |.|| ..||    |||:.|..:.:::|:
  Rat   160 RKYWIKGEPNN----QGNED-CAEL-REDG----WNDNKCDNKKFWICK 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tfcNP_612091.1 CLECT 249..373 CDD:153057 38/129 (29%)
LOC688858XP_038945829.1 CLECT_DC-SIGN_like 77..199 CDD:153060 42/151 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1509611at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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