DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment tfc and colec11

DIOPT Version :9

Sequence 1:	NP_612091.1	Gene:	tfc / 38141	FlyBaseID:	FBgn0035199	Length:	376	Species:	Drosophila melanogaster
Sequence 2:	XP_009291466.1	Gene:	colec11 / 492459	ZFINID:	ZDB-GENE-041114-11	Length:	277	Species:	Danio rerio

Alignment Length:	158	Identity:	44/158 - (27%)
Similarity:	73/158 - (46%)	Gaps:	14/158 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly   219 EVDNDCPNCVDESQYTPNKWTMPL----LKLGEKRYYLGIFFKANWFKATQYCRYHGMHLASISS 279
            |:|.......:|.::..|....|.    :|..:.:.||.:..:..:.:|..:|:..|.|||....
Zfish   124 EMDIQVVQLTNELKFIKNALPSPAAVAGIKETDSKVYLLVKEEKRYREAEVFCQGRGGHLAMPKD 188

  Fly   280 QEENDRLEKHIRDFGLGHEHFWISGTDLADEGNFFWMATGRPITFTNWNAGEPNNFRYENGEEEN 344
            ...|..:..::.|.||...:..|:  ||..||:|.::......||:.|..||||| .|   ::|:
Zfish   189 AAANRAIAGYVTDAGLSRVYIGIN--DLEREGHFVYVERSPMTTFSRWREGEPNN-AY---DDED 247

  Fly   345 CLELWNRDGKGLKWNDSPCSFETYFVCE 372
            |:|:.:..    :|.|..|....|||||
Zfish   248 CVEMVSSG----EWIDVACQLTMYFVCE 271

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
tfc	NP_612091.1	CLECT	249..373	CDD:153057	38/124 (31%)
colec11	XP_009291466.1	Collagen	44..102	CDD:189968
colec11	XP_009291466.1	CLECT_collectin_like	157..272	CDD:153061	38/125 (30%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R4956
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.940