DRSC/TRiP Functional Genomics Resources

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Protein Alignment tfc and Sftpa1

DIOPT Version :10

Sequence 1:NP_612091.1 Gene:tfc / 38141 FlyBaseID:FBgn0035199 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001257574.1 Gene:Sftpa1 / 24773 RGDID:3665 Length:258 Species:Rattus norvegicus


Alignment Length:136 Identity:33/136 - (24%)
Similarity:61/136 - (44%) Gaps:24/136 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 LLKLGEKRYYLGIFF----KANWFKATQYCRYHGMHLASISSQEENDRLEKHIRDFGLGHEHFWI 302
            :|.:|:|     :|.    ..|:....:.|...|.::|...:.|||:.:....:.:   :.:.::
  Rat   141 MLSVGDK-----VFSTNGQSVNFDTIKEMCTRAGGNIAVPRTPEENEAIASIAKKY---NNYVYL 197

  Fly   303 SGTDLADEGNFFWMATGRPITFTNWNAGEPNNFRYENGE-EENCLELWNRDGKGLKWNDSPCSFE 366
            ...:....|:|.:: .|..:.:|||..|||      .|: :|.|:|::. ||   .|||..|...
  Rat   198 GMIEDQTPGDFHYL-DGASVNYTNWYPGEP------RGQGKEKCVEMYT-DG---TWNDRGCLQY 251

  Fly   367 TYFVCE 372
            ...|||
  Rat   252 RLAVCE 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tfcNP_612091.1 CLECT 249..373 CDD:153057 30/129 (23%)
Sftpa1NP_001257574.1 Collagen 37..108 CDD:460189
CLECT_collectin_like 146..258 CDD:153061 31/131 (24%)
Blue background indicates that the domain is not in the aligned region.

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