DRSC/TRiP Functional Genomics Resources

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Protein Alignment tfc and clec-9

DIOPT Version :9

Sequence 1:NP_612091.1 Gene:tfc / 38141 FlyBaseID:FBgn0035199 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_507227.2 Gene:clec-9 / 190567 WormBaseID:WBGene00013493 Length:414 Species:Caenorhabditis elegans


Alignment Length:159 Identity:34/159 - (21%)
Similarity:49/159 - (30%) Gaps:53/159 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 DNDCPNCVDESQYTPNKWTMPLLKLGEKRYYLGIFFKANWFKATQYCRYHGMHLASISSQEEN-- 283
            ::||.|..:...|:.|.                   .|::.:|.|.|......:.||.|..||  
 Worm   155 EDDCSNNYNGFCYSYNP-------------------PASFVRAQQNCENQCGSIVSILSPNENRY 200

  Fly   284 -----DRLEKHIRDFGLGHEHFWISGTDLADEGNFFWMATGRPITFTNWNAGEPNNFRYENGEEE 343
                 .|.|.:  |.        |.|.....:..:.|. .|.|..|...|...|         ::
 Worm   201 VGALFPRYESN--DM--------IIGATWTTKDTYSWF-DGSPWNFNQINPASP---------KK 245

  Fly   344 NCLELWNRDGKGLKWNDSPCSFETY-FVC 371
            |||.:..      ..||:..|...| .||
 Worm   246 NCLAMVT------SLNDASASGSWYPIVC 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tfcNP_612091.1 CLECT 249..373 CDD:153057 29/131 (22%)
clec-9NP_507227.2 CLECT 22..149 CDD:214480
CLECT 162..277 CDD:214480 31/152 (20%)
CUB 302..409 CDD:238001
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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