DRSC/TRiP Functional Genomics Resources

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Protein Alignment tfc and clec-4

DIOPT Version :9

Sequence 1:NP_612091.1 Gene:tfc / 38141 FlyBaseID:FBgn0035199 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_496688.1 Gene:clec-4 / 189654 WormBaseID:WBGene00012583 Length:425 Species:Caenorhabditis elegans


Alignment Length:127 Identity:28/127 - (22%)
Similarity:45/127 - (35%) Gaps:39/127 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   263 ATQYCRYHGMHLASISSQEENDRLEKHIRDFGLGHEHFWISGTDLADEGNFFWM----------- 316
            |.:.|:.:|..|.::.:..:|    :.|.||             ..:..|.|||           
 Worm    51 AEKTCKGYGATLVTVKNSIDN----RAIADF-------------TGNNANLFWMGLYCFDSDVSK 98

  Fly   317 -----ATGRPITFTNWNAGEPNNFRYENGEEENCLELWNRDGKGLKWNDSPCSFETYFVCEV 373
                 |||....:.|:.||.|:   ...|   ||:....:......|..|.|:....|:||:
 Worm    99 CLWDDATGSAEVYDNFAAGFPH---IALG---NCVYYSVQGALAGMWLSSDCNDRRSFICEL 154

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tfcNP_612091.1 CLECT 249..373 CDD:153057 27/125 (22%)
clec-4NP_496688.1 CLECT 27..153 CDD:214480 26/124 (21%)
CLECT 162..283 CDD:214480
CUB 309..415 CDD:238001
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1509611at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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