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Protein Alignment tfc and Reg3a
DIOPT Version :9
Sequence 1: | NP_612091.1 |
Gene: | tfc / 38141 |
FlyBaseID: | FBgn0035199 |
Length: | 376 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001139318.1 |
Gene: | Reg3a / 171162 |
RGDID: | 621401 |
Length: | 174 |
Species: | Rattus norvegicus |
Alignment Length: | 155 |
Identity: | 40/155 - (25%) |
Similarity: | 61/155 - (39%) |
Gaps: | 21/155 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 229 DESQYTPNKWTMPLLKLGEKRY----YLGIFFKANWFKATQYC--RYHGMHLASISSQEENDRLE 287
|..:..|: |.....:|.|.| |..:....:||:|...| |..| ||.||.|..|...:.
Rat 27 DSQKAVPS--TRTSCPMGSKAYRSYCYTLVTTLKSWFQADLACQKRPSG-HLVSILSGGEASFVS 88
Fly 288 KHIRDFGLGHEHFWISGTD-----LADEGNFFWMATGRPITFTNWNAGEPNNFRYENGEEENCLE 347
..:......::..||...| ..:.|.:.| :....:.:.||: |:|:: .....||..
Rat 89 SLVTGRVNNNQDIWIGLHDPTMGQQPNGGGWEW-SNSDVLNYLNWD-GDPSS----TVNRGNCGS 147
Fly 348 LWNRDGKGLKWNDSPCSFETYFVCE 372
| ....:.|||.|..|..|..|||:
Rat 148 L-TATSEFLKWGDHHCDVELPFVCK 171
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
tfc | NP_612091.1 |
CLECT |
249..373 |
CDD:153057 |
35/135 (26%) |
Reg3a | NP_001139318.1 |
CLECT |
39..172 |
CDD:295302 |
37/141 (26%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1509611at2759 |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 1.010 |
|
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