DRSC/TRiP Functional Genomics Resources

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Protein Alignment tfc and Reg3a

DIOPT Version :9

Sequence 1:NP_612091.1 Gene:tfc / 38141 FlyBaseID:FBgn0035199 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001139318.1 Gene:Reg3a / 171162 RGDID:621401 Length:174 Species:Rattus norvegicus


Alignment Length:155 Identity:40/155 - (25%)
Similarity:61/155 - (39%) Gaps:21/155 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 DESQYTPNKWTMPLLKLGEKRY----YLGIFFKANWFKATQYC--RYHGMHLASISSQEENDRLE 287
            |..:..|:  |.....:|.|.|    |..:....:||:|...|  |..| ||.||.|..|...:.
  Rat    27 DSQKAVPS--TRTSCPMGSKAYRSYCYTLVTTLKSWFQADLACQKRPSG-HLVSILSGGEASFVS 88

  Fly   288 KHIRDFGLGHEHFWISGTD-----LADEGNFFWMATGRPITFTNWNAGEPNNFRYENGEEENCLE 347
            ..:......::..||...|     ..:.|.:.| :....:.:.||: |:|::    .....||..
  Rat    89 SLVTGRVNNNQDIWIGLHDPTMGQQPNGGGWEW-SNSDVLNYLNWD-GDPSS----TVNRGNCGS 147

  Fly   348 LWNRDGKGLKWNDSPCSFETYFVCE 372
            | ....:.|||.|..|..|..|||:
  Rat   148 L-TATSEFLKWGDHHCDVELPFVCK 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tfcNP_612091.1 CLECT 249..373 CDD:153057 35/135 (26%)
Reg3aNP_001139318.1 CLECT 39..172 CDD:295302 37/141 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1509611at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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