DRSC/TRiP Functional Genomics Resources

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Protein Alignment tfc and Acan

DIOPT Version :9

Sequence 1:NP_612091.1 Gene:tfc / 38141 FlyBaseID:FBgn0035199 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001348429.1 Gene:Acan / 11595 MGIID:99602 Length:2170 Species:Mus musculus


Alignment Length:383 Identity:82/383 - (21%)
Similarity:130/383 - (33%) Gaps:112/383 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 TTIPVAEPISQV---PHGFQLGQ---------NNHISSSSNISRSGGGNGRDKRGAQLDPSEI-- 75
            |.:.:..|.::|   |..||.|.         :...|::|:|.....|.......|..|.:||  
Mouse  1776 TDLEMTTPSTEVNSNPWTFQEGTREGSAAPEVSGESSTTSDIDTGTSGVPSATPMASGDRTEISG 1840

  Fly    76 -----------ARQNQITQQIFANYLERRLFPNRTANQKIPTIADILPKPKPSPRPRPRG----- 124
                       |..:.||:..:|.       |.|...:.:..|        .||.|...|     
Mouse  1841 EWSDHTSEVNVAISSTITESEWAQ-------PTRYPTETLQEI--------ESPNPSYSGEETQT 1890

  Fly   125 ----FAASDGGNFKRSGGGAQRNRLAAAASKRQSGYNRKRLREEQEEEEEADDQERDQQPLANQE 185
                .:.:|......|.|               ||         :.|...||..|....|..|  
Mouse  1891 AETTMSLTDAPTLSSSEG---------------SG---------ETESTVADIDECLSSPCLN-- 1929

  Fly   186 DFDYDVQESLQSVESEQHDQYYGNIFHRDPSENEVDNDCPNCVDESQYTPNKWTMPLLKLGEKRY 250
              .....::|.:........|.||:                |..:.:.....||.     .:...
Mouse  1930 --GATCVDALDTFTCLCLPSYRGNL----------------CEIDQEQCEEGWTK-----FQGHC 1971

  Fly   251 YLGIFFKANWFKATQYCRYHGMHLASISSQEENDRLEKHIRDFGLGHEHFWISGTDLADEGNFFW 315
            |.....:..|..|.:.||....||:||.:.||.:.:.|:.:|:.      ||...|...||:|.|
Mouse  1972 YRHFHDRETWVDAERRCREQQSHLSSIVTPEEQEFVNKNAQDYQ------WIGLNDRTIEGDFRW 2030

  Fly   316 MATGRPITFTNWNAGEPNNFRYENGEEENC-LELWNRDGKGLKWNDSPCSFETYFVCE 372
             :.|..:.|..|...:|:|| :..||:  | :.:|:..|   :|||.||:::..|.|:
Mouse  2031 -SDGHSLQFEKWRPNQPDNF-FATGED--CVVMIWHERG---EWNDVPCNYQLPFTCK 2081

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tfcNP_612091.1 CLECT 249..373 CDD:153057 38/125 (30%)
AcanNP_001348429.1 Ig_Aggrecan 43..154 CDD:143308
G1-A 48..140
G1-B 152..247
Link_domain_CSPGs_modules_1_3 153..247 CDD:239594
G1-B' 253..349
Link_domain_CSPGs_modules_2_4 254..349 CDD:239597
G2-B 486..580
Link_domain_CSPGs_modules_1_3 487..581 CDD:239594
G2-B' 587..682
Link_domain_CSPGs_modules_2_4 588..683 CDD:239597
KS 685..803
Herpes_ICP4_C 689..>1027 CDD:332854
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 737..1079
CS-1 805..1231
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1108..1239
AidA <1171..>1630 CDD:330218
Cell attachment site. /evidence=ECO:0000255 1171..1173
CS-2 1232..1917 32/179 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1299..1465
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1491..1538
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1586..1671
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1782..1838 12/55 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1861..1914 13/91 (14%)
EGF_CA 1918..1954 CDD:238011 8/55 (15%)
CLECT_CSPGs 1960..2083 CDD:153058 40/140 (29%)
CCP 2087..2143 CDD:153056
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 72 1.000 Domainoid score I9266
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4956
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.940

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