DRSC/TRiP Functional Genomics Resources

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Protein Alignment tfc and Clec19a

DIOPT Version :9

Sequence 1:NP_612091.1 Gene:tfc / 38141 FlyBaseID:FBgn0035199 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_038953831.1 Gene:Clec19a / 100909498 RGDID:6503302 Length:234 Species:Rattus norvegicus


Alignment Length:170 Identity:35/170 - (20%)
Similarity:51/170 - (30%) Gaps:56/170 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 NQEDFDYDVQESLQSVESE-QHDQYYGNIFHRDPSENEVDNDCPNCVDESQYTPNKWTMPLLKLG 246
            |.|:.|.....|||..|.: .|:.|:...........|....| .                    
  Rat    12 NLENSDLGTSASLQFREKKIDHNSYWRTTLDEKSRLLEFKGPCXR-------------------- 56

  Fly   247 EKRYYLGIFFKAN--WFKATQYC-----RYHGMHLASISSQEEN----DRLEKHIRD------FG 294
                    ||..|  |.:|..:|     ......:.||.|.||:    |.:...:.|      .|
  Rat    57 --------FFPINKIWAEANIHCPQFTASRKSAKMVSIHSWEESVFVYDLVNSCVPDIPADTCMG 113

  Fly   295 LGHEHFWISGTDLADEGNFFWMATGRPITFTNWNAGEPNN 334
            | ..|        ..||.|.| :.|.|..::.|:..:|.:
  Rat   114 L-RVH--------RQEGQFEW-SDGSPYGYSYWDRSQPGD 143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tfcNP_612091.1 CLECT 249..373 CDD:153057 24/103 (23%)
Clec19aXP_038953831.1 CLECT 49..194 CDD:413318 26/133 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1509611at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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