DRSC/TRiP Functional Genomics Resources

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Protein Alignment tfc and reg4

DIOPT Version :9

Sequence 1:NP_612091.1 Gene:tfc / 38141 FlyBaseID:FBgn0035199 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_004916045.2 Gene:reg4 / 100485485 XenbaseID:XB-GENE-952114 Length:161 Species:Xenopus tropicalis


Alignment Length:131 Identity:46/131 - (35%)
Similarity:64/131 - (48%) Gaps:10/131 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 KRYYLGIF-FKANWFKATQYC-RY-HGMHLASISSQEENDRLEKHIRDFGLGHEHFWISGTDLAD 309
            |.:..|.| ||.:|.:|...| .| ||.|||||....|.|.:..|:..:.:..: .||...|...
 Frog    38 KSHCYGYFRFKLSWSEAEFECVSYGHGAHLASILDNAEADIIASHVSAYQVNGD-VWIGLHDPEQ 101

  Fly   310 EGNFFWMATGRPITFTNWNAGEPNNFRYENGEEENCLELWNRDGKGLKWNDSPCSFETYFVCEVQ 374
            ...:.| ..|....:.||..|||||.    ..||.|.|| ..:.:..||||:||:.:.:|||:.:
 Frog   102 NRRWKW-NDGSMYNYRNWKNGEPNNV----NNEEYCGEL-AVETRFEKWNDAPCNIQNHFVCKFK 160

  Fly   375 P 375
            |
 Frog   161 P 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tfcNP_612091.1 CLECT 249..373 CDD:153057 44/126 (35%)
reg4XP_004916045.2 CLECT_REG-1_like 30..159 CDD:153064 45/127 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1509611at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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