DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment galene and CG42594

DIOPT Version :9

Sequence 1:NP_612084.1 Gene:galene / 38133 FlyBaseID:FBgn0035192 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_001162668.2 Gene:CG42594 / 8674091 FlyBaseID:FBgn0260971 Length:1039 Species:Drosophila melanogaster


Alignment Length:702 Identity:118/702 - (16%)
Similarity:196/702 - (27%) Gaps:383/702 - (54%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 DIQNLRVNLTENIWLLSDDAVVLRESDWMANVSKHLANFEKQILTAIKAD--------------- 122
            |..::|....||||.::....:|.:.:|....:..:|.|:.|::..:..|               
  Fly   477 DTYDVRQRTIENIWDITVSLNILYKENWTKLAALEIAKFQDQLIKRLNEDVMLQLSHDDVANAPS 541

  Fly   123 -------------------GWDGDEDLRKS---------------------------QWTFAGSL 141
                               |..|..:....                           :|.||.:.
  Fly   542 SSSSSSSSSSSSSSSTGASGVPGSNNPATEAVLLHTHYHHHRAGGVGGVAVGGGPPHEWNFAKAF 606

  Fly   142 FYSIIVITTIGYGHISPRTDWGKVTTIFYAIVGIPLMLICLSNIGDVMATSFRFLYWR-ICCYVC 205
            .||:.|:||||||:::|||..|::.|:.||..||||.|:.||:.|.::|...|.::.: :||.:|
  Fly   607 LYSLTVLTTIGYGNVAPRTTLGRIVTLAYAFFGIPLTLVYLSSTGSILARVAREVFSKALCCCLC 671

  Fly   206 TRTAKRPRNARSRQRSMRSQRHARSQPPPSFRRSMKMTQRSGNDSGLGPSMGHAYSDPDLRTMGR 270
            :                                                :.|:..          
  Fly   672 S------------------------------------------------NCGYCC---------- 678

  Fly   271 GYDDREFGHRSSGGGRNRRQQQQQHLHHDPRQRHTIYGDGYETQTLNRSNRYSSRQRQRDRMRDR 335
             ||::....      :.||.:                                 |:||::.:|.:
  Fly   679 -YDEKRMAE------KERRMR---------------------------------RKRQQEELRKQ 703

  Fly   336 HTVERERYSRSHLDAGSIEDFGDMQPPAKRAASVRSVRSPHNQESSKASRELHRLHSAPGRSRAK 400
            ..|.:|.|                        .||.|                 .|:.|.:    
  Fly   704 QAVMQEPY------------------------YVRDV-----------------FHATPEK---- 723

  Fly   401 SVDPRHVSSHYEDVDEDVVRKTPIIPNRYALDDFGGNRRQAAPRSQSMPRSAHQRQRQKDRERER 465
                                            |.|..                            
  Fly   724 --------------------------------DAGAG---------------------------- 728

  Fly   466 SPQPPPQSSYRQQHDRRAGSLGRQSSRYGNHLELPDYDAPPPGRDHRRDRRGHSQGRYEDYVEES 530
              .|||.:.      ...||:|          .|.|.|:                      :..|
  Fly   729 --APPPNAG------GPVGSVG----------GLGDIDS----------------------LSAS 753

  Fly   531 FDEGSLYGDNNYEDYPPERHHSRSREPKRNRRRERAERLPPSPRIMSPMGFPVQRQIRRRPSYDY 595
            ...||::|                                     :|.:                
  Fly   754 ESRGSMHG-------------------------------------LSIL---------------- 765

  Fly   596 DDDDSMYGDEYGDYGDLLPKDRPVPIWLCVFLVVSYILGGAVLFAYWENWSFLDSAYFCFITLTT 660
                                   .||.||..:::.||:.||.:....|.|..||..||||::|:|
  Fly   766 -----------------------APILLCFSMMIIYIVFGAAVLYRLEKWPILDGIYFCFMSLST 807

  Fly   661 IGFGDFVPAKGVKDESEQSIAYCSLYLLFGIALLAMSFNLVQEEFIANVKEV 712
            |||||.:|  |::.||..:..:||:|::.|:.|.||.||::.||.:..::.|
  Fly   808 IGFGDMLP--GLRRESNATTWFCSVYIMSGMTLTAMCFNVIHEEIVHRIRIV 857

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
galeneNP_612084.1 Ion_trans_2 <134..189 CDD:285168 27/54 (50%)
NESP55 341..586 CDD:115071 23/244 (9%)
Ion_trans <621..709 CDD:278921 37/87 (43%)
Ion_trans_2 626..706 CDD:285168 34/79 (43%)
CG42594NP_001162668.2 Ion_trans_2 <599..656 CDD:285168 27/56 (48%)
Ion_trans <601..640 CDD:278921 18/38 (47%)
Ion_trans_2 774..846 CDD:285168 32/73 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461325
Domainoid 1 1.000 51 1.000 Domainoid score I4317
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D542195at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm41373
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11003
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.950

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