DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment galene and CG42340

DIOPT Version :9

Sequence 1:NP_612084.1 Gene:galene / 38133 FlyBaseID:FBgn0035192 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_001368973.1 Gene:CG42340 / 7354472 FlyBaseID:FBgn0259242 Length:759 Species:Drosophila melanogaster


Alignment Length:713 Identity:136/713 - (19%)
Similarity:214/713 - (30%) Gaps:370/713 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 KPQRGRCVAAICFSWKVLTCIVSHVLLVLLVVSYCVGGAYLFQHLERPHELE------------- 69
            |..:..|::|              ..::|||:.|...|:.:|..||  .|||             
  Fly    87 KAPKSHCISA--------------TGVLLLVLLYTAMGSIVFVTLE--GELEDGGALETAVAASK 135

  Fly    70 --VKRDIQN--LRVNLTENIWLLSDDAVVLRESDWMANVSKHLANFEKQILTAIKAD------GW 124
              .:.::.|  :|....:.:|.:::|..:|.:.:|....::.:..|:..:|.|::..      |.
  Fly   136 PYPRTELANAEIRSRTVDRLWSITEDLNILYKENWTRLAAQEVQLFQDTLLRAVRQSKVYPPGGI 200

  Fly   125 DGDEDLRKSQWTFAGSLFYSIIVITTIGYGHISPRTDWGKVTTIFYAIVGIPLMLICLSNIGDVM 189
            ..:....|  ||:|.:..||:.:|||||||.|||||.||:|..:.||:.|||::|:.||.:|:.:
  Fly   201 QLNAPTHK--WTYASAFLYSLTLITTIGYGGISPRTQWGRVAALVYALFGIPIVLLYLSAMGEAL 263

  Fly   190 ATSFRFLYWRICCYVCTRTAKRPRNARSRQRSMRSQRHARSQPPPSFRRSMKMTQRSGNDSGLGP 254
            :...|.|                                       |||     ||.....|.||
  Fly   264 SAGMRCL---------------------------------------FRR-----QRVKGGPGGGP 284

  Fly   255 SMGHAYSDPDLRTMGRGYDDREFGHRSSGGGRNR-RQQQQQHLHHDPRQRHTIYGDGYETQTLNR 318
            ..|        .:.|.|     .|...|||||.. :.:.|.|..|                    
  Fly   285 GGG--------ASGGVG-----SGAGGSGGGRKTDKNKGQGHYGH-------------------- 316

  Fly   319 SNRYSSRQRQRDRMRDRHTVERERYSRSHLDAGSIEDFGDMQPPAKRAASVRSVRSPHNQESSKA 383
                                                                             
  Fly   317 ----------------------------------------------------------------- 316

  Fly   384 SRELHRLHSAPGRSRAKSVDPRHVSSHYEDVDEDVVRKTPIIPNRYALDDFGGNRRQAAPRSQSM 448
             ::||:....|              |.|:                                 |..
  Fly   317 -QKLHQYGLPP--------------SVYQ---------------------------------QQQ 333

  Fly   449 PRSAHQRQRQKDRERERSPQPPPQSSYRQQHDRRAGSLGRQSSRYGNHLELPDYDAPPPGRDHRR 513
            .:.|.|.|:|:.::.:::.|...|.             |::||  ||                  
  Fly   334 AQQAQQAQQQQAQQAQQAQQQQVQQ-------------GKKSS--GN------------------ 365

  Fly   514 DRRGHSQGRYEDYVEESFDEGSLYGDNNYEDYPPERHHSRSREPKRNRRRERAERLPPSPRIMSP 578
             |||                                                           ||
  Fly   366 -RRG-----------------------------------------------------------SP 370

  Fly   579 MGFPVQRQIRRRPSYDYDDDDSMYGDEYGDYGDLLPKDRPVPIWLCVFLVVSYILGGAVLFAYWE 643
                                                   .|||.:||.:::.|:..||:||...:
  Fly   371 ---------------------------------------SVPISICVCVLLCYVSSGAILFHKLQ 396

  Fly   644 NWSFLDSAYFCFITLTTIGFGDFVPAKGVKDESEQSIAYCSLYLLFGIALLAMSFNLVQEEFI 706
            |||.|:|.||||.:|.|||||:..|...|      ::...|.|:|.|:|::||.|:|:|.|.:
  Fly   397 NWSVLESLYFCFTSLGTIGFGEMAPNGAV------ALYTASAYILVGMAVVAMCFSLIQTEIV 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
galeneNP_612084.1 Ion_trans_2 <134..189 CDD:285168 29/54 (54%)
NESP55 341..586 CDD:115071 22/244 (9%)
Ion_trans <621..709 CDD:278921 36/86 (42%)
Ion_trans_2 626..706 CDD:285168 33/79 (42%)
CG42340NP_001368973.1 Ion_trans_2 <208..264 CDD:400301 30/57 (53%)
Ion_trans_2 380..453 CDD:400301 33/78 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461315
Domainoid 1 1.000 51 1.000 Domainoid score I4317
eggNOG 1 0.900 - - E1_KOG1418
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D542195at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11003
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.850

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