DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment galene and kcnk18

DIOPT Version :9

Sequence 1:NP_612084.1 Gene:galene / 38133 FlyBaseID:FBgn0035192 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_001177236.2 Gene:kcnk18 / 561821 ZFINID:ZDB-GENE-100405-2 Length:391 Species:Danio rerio


Alignment Length:703 Identity:130/703 - (18%)
Similarity:207/703 - (29%) Gaps:336/703 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 GRCVAAICFSWKVLTCIVSHVLLVLLVVSYCVGGAYLFQHLERPHELEVKRDIQNLRVNLTENIW 86
            |||....   |:    :..||.|:|.:|.|.|.||.:|:.:|..:......:|.::...:.|   
Zfish    11 GRCSTLF---WR----LFPHVFLILSLVLYAVLGALVFRAIEYTNPRNESEEILSIVQKVME--- 65

  Fly    87 LLSDDAVVLRESDWMANVSKHLANFEKQILTAIKADGWDGDEDLRKSQWTFAGSLFYSIIVITTI 151
                  :|...:|  |:..|||.|..|.||     |.:..::: |...|||..|||:...|.||:
Zfish    66 ------IVQNHTD--ASEQKHLINKAKYIL-----DDYCYEKE-RDHGWTFFASLFFCCTVFTTV 116

  Fly   152 GYGHISPRTDWGKVTTIFYAIVGIPLMLICLSNIGDVMATSFRFLYWRICCYVCTRTAKRPRNAR 216
            |||.|.|.|..|||..:.||:|||||||:.:|::||::|......|.|:..:             
Zfish   117 GYGRIYPLTSKGKVACVLYAMVGIPLMLLVISDVGDLLAVLLSKAYTRLNLF------------- 168

  Fly   217 SRQRSMRSQRHARSQPPPSFRRSMKMTQRSGNDSGLGPSMGHAYSDPDLRTMGRGYDDREFGHRS 281
                               |||.:                                     ||:|
Zfish   169 -------------------FRRWI-------------------------------------GHQS 177

  Fly   282 SGGGRNRRQQQQQHLHHDPRQRHTIYGDGYETQTLNRSNRYSSRQRQRDRMRDRHTVERERYSRS 346
                                         :..|:..:::.....|...|                
Zfish   178 -----------------------------WRLQSHEKTSALPQAQADTD---------------- 197

  Fly   347 HLDAGSIEDFGDMQPPAKRAASVRSVRSPHNQESSKASRELHRLHSAPGRSRAKSVDPRHVSSHY 411
                                                                          ..|
Zfish   198 --------------------------------------------------------------GTY 200

  Fly   412 EDVDEDVVRKTPIIPNRYALDDFGGNRRQAAPRSQSMPRSAHQRQRQK---DRERERSPQPPPQS 473
            :...:.||.:|.             |.:|......|:.|.:.|.:..|   ||...|       .
Zfish   201 KFNQDVVVLETT-------------NNQQVIQTRSSIRRGSFQLRNNKEIFDRIIVR-------E 245

  Fly   474 SYRQQHDRRAGSLGRQSSRYGNHLELPDYDAPPPGRDHRRDRRGHSQGRYEDYVEESFDEGSLYG 538
            |:|.:     |:|.:..|       .|:.|..|..:|                        .|:.
Zfish   246 SFRIK-----GTLSKSCS-------CPELDRVPTPKD------------------------ELFN 274

  Fly   539 DNNYEDYPPERHHSRSREPKRNRRRERAERLPPSPRIMSPMGFPVQRQIRRRPSYDYDDDDSMYG 603
            |...|                      .|:|                                  
Zfish   275 DIGQE----------------------MEQL---------------------------------- 283

  Fly   604 DEYGDYGDLLPKDRPVPIWLCVFLVVSYILGGAVLFAYWE-NWSFLDSAYFCFITLTTIGFGDFV 667
                          .||:.:.:.:|.:|::..:.:...|| .....|:.||.|||||||||||.|
Zfish   284 --------------DVPLLVILLMVFAYMVICSQILKCWEKQMDHSDAFYFTFITLTTIGFGDIV 334

  Fly   668 PAKGVKDESEQSIAYCSLYLLFGIALLAMSFNLVQEEFIANVKEVARRLGILK 720
            |      |..:......|:::.|:|:::|:|.|.|.:.:...:...:.|.:.|
Zfish   335 P------EHPKFFMVTFLFIITGMAIMSMAFKLGQSQIVCFYRRCIKSLSMGK 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
galeneNP_612084.1 Ion_trans_2 <134..189 CDD:285168 30/54 (56%)
NESP55 341..586 CDD:115071 27/247 (11%)
Ion_trans <621..709 CDD:278921 28/88 (32%)
Ion_trans_2 626..706 CDD:285168 28/80 (35%)
kcnk18NP_001177236.2 Ion_trans_2 <99..154 CDD:285168 30/54 (56%)
Ion_trans_2 292..367 CDD:285168 28/80 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1418
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D542195at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm24931
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11003
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2863
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
87.880

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