DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment galene and sand

DIOPT Version :9

Sequence 1:NP_612084.1 Gene:galene / 38133 FlyBaseID:FBgn0035192 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_610349.1 Gene:sand / 35777 FlyBaseID:FBgn0033257 Length:395 Species:Drosophila melanogaster


Alignment Length:691 Identity:145/691 - (20%)
Similarity:223/691 - (32%) Gaps:354/691 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 SHVLLVLLVVSYCVGGAYLFQHL----------ERPHELEVKRDIQNLRVNLTENIW-LLSDDAV 93
            |:|.::|||..|.:|||::||.:          |:||....:    |........|| |.:::..
  Fly    32 SNVGIILLVTFYIIGGAFIFQSIEIFEYERLKSEKPHRFIAR----NFSGECLSRIWELTAENIS 92

  Fly    94 VLRESDWMANVSKHLANFEKQILTAIKADGWDGDEDLRKSQWTFAGSLFYSIIVITTIGYGHISP 158
            ......:...|:..|.::::.|:.. :..|.|.:      ||:|:|:..||:.||||||||:|:|
  Fly    93 FFDHHAYRRRVNDVLLDYQRAIVKK-QLKGPDVE------QWSFSGAFLYSLTVITTIGYGNITP 150

  Fly   159 RTDWGKVTTIFYAIVGIPLMLICLSNIGDVMATSFRFLYWRIC-CYVCTRTAKRPRNARSRQRSM 222
            .::.||:.||.|||:|:||.|:.|||||||:|.||:::|.::| |.:|...|||        |.:
  Fly   151 HSECGKLVTILYAIIGMPLFLLYLSNIGDVLAKSFKWIYSKVCLCRICPGVAKR--------RII 207

  Fly   223 RSQRHARSQPPPSFRRSMKMTQRSGNDSGLGPSMGHAYSDPDLRTMGRGYDDREFGHRSSGGGRN 287
            |.:|                                                             
  Fly   208 RERR------------------------------------------------------------- 211

  Fly   288 RRQQQQQHLHHDPRQRHTIYGDGYETQTLNRSNRYSSRQRQRDRMRDRHTVERERYSRSHLDAGS 352
                                                 :.||..|....|.:|..|.|.|:....|
  Fly   212 -------------------------------------KMRQLARALQMHDMENARGSSSYTSTSS 239

  Fly   353 IEDFGDMQPPAKRAASVRSVRSPHNQESSKASRELHRLHSAPGRSRAKSVDPRHVSSHYEDVDED 417
                                .:..|..||:.:|.                               
  Fly   240 --------------------TTSSNSSSSEYTRS------------------------------- 253

  Fly   418 VVRKTPIIPNRYALDDFGGNRRQAAPRSQSMPRSAHQRQRQKDRERERSPQPPPQSSYRQQHDRR 482
                                                                             
  Fly   254 ----------------------------------------------------------------- 253

  Fly   483 AGSLGRQSSRYGNHLELPDYDAPPPGRDHRRDRRGHSQGRYEDYVEESFDEGSLYGDNNYEDYPP 547
                .||||      .|.|.                      .|.|...|               
  Fly   254 ----SRQSS------SLVDI----------------------QYTESDSD--------------- 271

  Fly   548 ERHHSRSREPKRNRRRERAERLPPSPRIMSPMGFPVQRQIRRRPSYDYDDDDSMYGDEYGDYGDL 612
                                               ::|:||                  |...::
  Fly   272 -----------------------------------IEREIR------------------GSTDEI 283

  Fly   613 LPKDRPVPIWLCVFLVVSYILGGAVLFAYWENWSFLDSAYFCFITLTTIGFGDFVPAKGV----K 673
                 .||:.:|||::|.|||.||:||..||:|::||.:|||.|:|::|||||.||...|    :
  Fly   284 -----TVPVTVCVFVMVGYILWGALLFGRWEDWNYLDGSYFCLISLSSIGFGDLVPGDRVITADR 343

  Fly   674 DESEQSIAYCSLYLLFGIALLAMSFNLVQEEFIANVKEVAR 714
            |:.|.|...|::|||.|:|::||.|||:||:.:.|::.:.|
  Fly   344 DKVEVSFILCAIYLLLGMAVIAMCFNLMQEQVVHNIRAIKR 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
galeneNP_612084.1 Ion_trans_2 <134..189 CDD:285168 33/54 (61%)
NESP55 341..586 CDD:115071 17/244 (7%)
Ion_trans <621..709 CDD:278921 45/91 (49%)
Ion_trans_2 626..706 CDD:285168 43/83 (52%)
sandNP_610349.1 Ion_trans_2 123..183 CDD:285168 35/65 (54%)
Ion_trans_2 292..377 CDD:285168 43/84 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461323
Domainoid 1 1.000 51 1.000 Domainoid score I4317
eggNOG 1 0.900 - - E1_KOG1418
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D542195at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm43430
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11003
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2863
87.850

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