DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment galene and twk-40

DIOPT Version :9

Sequence 1:NP_612084.1 Gene:galene / 38133 FlyBaseID:FBgn0035192 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_001255206.1 Gene:twk-40 / 189006 WormBaseID:WBGene00006691 Length:436 Species:Caenorhabditis elegans


Alignment Length:703 Identity:114/703 - (16%)
Similarity:186/703 - (26%) Gaps:413/703 - (58%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 SWKVLT-CIVSHVLLVLLVVSYCVGGAYLFQHLERPHELEVK-RDIQNLRVN---LTENIWLLSD 90
            :||... .|::||.|::|.|.|...||:||..||:|:|:||: |:|:...::   :.|::|    
 Worm    46 TWKTYARIILAHVSLIVLSVVYVGFGAFLFYQLEQPNEVEVRARNIERFNIHKRQMIEHLW---- 106

  Fly    91 DAVVLRESDWMANVSKHLANFEKQILTAIKADGWD-----------GDEDLRKSQWTFAGSLFYS 144
               .:|||....:|.:.||......:|.|..:.:|           |.|| ....||:..:||::
 Worm   107 ---EMRESGIGQHVVEDLAVKYVDNVTRILFEAFDTHCIGAKHLRPGGED-EDYNWTYMTALFFT 167

  Fly   145 IIVITTIGYGHISPRTDWGKVTTIFYAIVGIPLMLICLSNIGDVMATSFRFLY-WRICCYVCTRT 208
            ..::||||||:::|.|..||:..|.||:.|:||:||.:::||..::.:...|| |          
 Worm   168 TTLLTTIGYGNLTPVTGRGKLLCILYALFGVPLILITVADIGKFLSENIVQLYTW---------- 222

  Fly   209 AKRPRNARSRQRSMRSQRHARSQPPPSFRRSMKMTQRSGNDSGLGPSMGHAYSDPDLRTMGRGYD 273
                                       :|:.                                  
 Worm   223 ---------------------------YRKL---------------------------------- 226

  Fly   274 DREFGHRSSGGGRNRRQQQQQHLHHDPRQRHTIYGDGYETQTLNRSNRYSSRQRQRDRMRDRHTV 338
                                                                             
 Worm   227 ----------------------------------------------------------------- 226

  Fly   339 ERERYSRSHLDAGSIEDFGDMQPPAKRAASVRSVRSPHNQESSKASRELHRLHSAPGRSRAKSVD 403
             ||:.|                   |:..||.|.:...|:|.                       
 Worm   227 -REKCS-------------------KQKYSVISSKDDKNKEG----------------------- 248

  Fly   404 PRHVSSHYEDVDEDVVRKTPIIPNRYALDDFGGNRRQAAPRSQSMPRSAHQRQRQKDRERERSPQ 468
                     |::.|                                                   
 Worm   249 ---------DLNLD--------------------------------------------------- 253

  Fly   469 PPPQSSYRQQHDRRAGSLGRQSSRYGNHLELPDYDAPPPGRDHRRDRRGHSQGRYEDYVEESFDE 533
                                       ||                          |:|:.     
 Worm   254 ---------------------------HL--------------------------ENYIS----- 260

  Fly   534 GSLYGDNNYEDYPPERHHSRSREPKRNRRRERAERLPPSPRIMSPMGFPVQRQIRRRPSYDYDDD 598
                                                                             
 Worm   261 ----------------------------------------------------------------- 260

  Fly   599 DSMYGDEYGDYGDLLPKDRPVPIWLCVFLVVSYILGGAVLFAYWENWSFLDSAYFCFITLTTIGF 663
                                :||:|.|.:::|||..|||:.:.||.|.|....||.|||:||:||
 Worm   261 --------------------IPIFLIVAILLSYITFGAVVLSMWEGWDFFSGFYFSFITMTTVGF 305

  Fly   664 GDFVPAKGVKDESEQSIAYCSLYLLFGIALLAMSFNLVQEEFIANVKEVARRL 716
            ||.||.|    .....:..|  |::.|:::..|..:||..::|..:....|.:
 Worm   306 GDIVPLK----REYYILDLC--YIIIGLSITTMCIDLVGIQYIRKMHYFGRAI 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
galeneNP_612084.1 Ion_trans_2 <134..189 CDD:285168 24/54 (44%)
NESP55 341..586 CDD:115071 14/244 (6%)
Ion_trans <621..709 CDD:278921 34/87 (39%)
Ion_trans_2 626..706 CDD:285168 30/79 (38%)
twk-40NP_001255206.1 Ion_trans_2 <174..214 CDD:285168 18/39 (46%)
Ion_trans_2 269..343 CDD:285168 30/79 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D542195at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11003
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.020

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