DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment galene and twk-8

DIOPT Version :9

Sequence 1:NP_612084.1 Gene:galene / 38133 FlyBaseID:FBgn0035192 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_001023596.1 Gene:twk-8 / 177727 WormBaseID:WBGene00006663 Length:769 Species:Caenorhabditis elegans


Alignment Length:690 Identity:102/690 - (14%)
Similarity:183/690 - (26%) Gaps:393/690 - (56%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 VSHVLLVLLVVSYCVGGAYLFQHLE--------RPHELEVKRDIQNLRVNLTENIWLLSDDAVVL 95
            :.::..::.::.|.:.||.:|..||        ...:.:.||:.:.|.:.:.|    |..|....
 Worm    87 IKYLFPLIFIMFYMLIGAIIFYLLESGTAEDAANEEDYKYKRERRLLLLRMEE----LVQDTASR 147

  Fly    96 RESDWMANVSKHLANFEKQILTAIKADGWDGDEDLRKSQWTFAGSLFYSIIVITTIGYGHISPRT 160
            |.:.....:.:.:.|:|:::..|:|          .:|||||..:::::..:.||||||.|:..|
 Worm   148 RRAYRKKALEEAIDNYEQKLDFAVK----------NESQWTFMSAMYFAGTLFTTIGYGDIACIT 202

  Fly   161 DWGKVTTIFYAIVGIPLMLICLSNIGDVMATSFRFLYWRICCYVCTRTAKRPRNARSRQRSMRSQ 225
            ..|::.|:.|:.||||.|||.|:::|       :|||                            
 Worm   203 SAGRIATVIYSCVGIPFMLITLNDLG-------KFLY---------------------------- 232

  Fly   226 RHARSQPPPSFRRSMKMTQRSGNDSGLGPSMGHAYSDPDLRTMGRGYDD--------REFGHRSS 282
                                 .|.:|                ..:|::|        |....|.:
 Worm   233 ---------------------NNING----------------CVKGFEDFTTYLGAFRLCNRRGN 260

  Fly   283 GGGRNRRQQQQQHLHHDPRQRHTIYGDGYETQTLNRSNRYSSRQRQRDRMRDRHTVERERYSRSH 347
            |.                      :..|.|..|                                
 Worm   261 GN----------------------FQKGDELVT-------------------------------- 271

  Fly   348 LDAGSIEDFGDMQPPAKRAASVRSVRSPHNQESSKASRELHRLHSAPGRSRAKSVDPRHVSSHYE 412
            |:||:.   |....|                       |:..|.|..|..|.:        |.||
 Worm   272 LEAGTT---GTTDAP-----------------------EVSSLASELGSERNE--------SDYE 302

  Fly   413 DVDEDVVRKTPIIPNRYALDDFGGNRRQAAPRSQSMPRSAHQRQRQKDRERERSPQPPPQSSYRQ 477
            |::::                          ..:||||                           
 Worm   303 DIEDE--------------------------EERSMPR--------------------------- 314

  Fly   478 QHDRRAGSLGRQSSRYGNHLELPDYDAPPPGRDHRRDRRGHSQGRYEDYVEESFDEGSLYGDNNY 542
                                                                             
 Worm   315 ----------------------------------------------------------------- 314

  Fly   543 EDYPPERHHSRSREPKRNRRRERAERLPPSPRIMSPMGFPVQRQIRRRPSYDYDDDDSMYGDEYG 607
                                                                             
 Worm   315 ----------------------------------------------------------------- 314

  Fly   608 DYGDLLPKDRPVPIWLCVFLVVSYILGGAVLFAYWENWSFLDSAYFCFITLTTIGFGDFVPAKGV 672
                       :.:.:.:.:.|.:|...:.||..||:||:..|.||.||:|:|||.||      |
 Worm   315 -----------MSVKVALGITVGWIFFCSALFKLWEDWSYGQSCYFMFISLSTIGLGD------V 362

  Fly   673 KDESEQSIAYCSLYLLFGIALLAMSFNLVQ---EEFIANV 709
            ..:....:..|.::::.|::|::|:.|::|   |:|..|:
 Worm   363 SVQRRDMMVLCFVFVIVGLSLVSMTINVIQVALEDFYVNL 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
galeneNP_612084.1 Ion_trans_2 <134..189 CDD:285168 24/54 (44%)
NESP55 341..586 CDD:115071 18/244 (7%)
Ion_trans <621..709 CDD:278921 28/90 (31%)
Ion_trans_2 626..706 CDD:285168 27/82 (33%)
twk-8NP_001023596.1 Ion_trans_2 169..233 CDD:285168 30/129 (23%)
Ion_trans_2 323..397 CDD:285168 26/79 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D542195at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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