DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment galene and Kcnk4

DIOPT Version :9

Sequence 1:NP_612084.1 Gene:galene / 38133 FlyBaseID:FBgn0035192 Length:729 Species:Drosophila melanogaster
Sequence 2:XP_006526779.1 Gene:Kcnk4 / 16528 MGIID:1298234 Length:444 Species:Mus musculus


Alignment Length:517 Identity:115/517 - (22%)
Similarity:175/517 - (33%) Gaps:154/517 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RRAQSLPAHMLEP-------AKPQRGRCVAAICFSWKVLTCIVSHVLLVLLVVSYCVGGAYLFQH 61
            ||..:.|..:..|       |.|..||.:.:        |.:::.:.||||   |.|.||.:||.
Mouse    19 RRLTTAPQELPAPSSQAGSGAGPASGRTMRS--------TTLLALLALVLL---YLVSGALVFQA 72

  Fly    62 LERPHELEVKRDIQNLRVNLTENIWLLSDDAVVLRESDWMANVSKHLANFEKQILTAI-----KA 121
            ||:|||.:.::.:.:.|..      .|.|...|.::|         |.:|.|.::.|:     ..
Mouse    73 LEQPHEQQAQKKMDHGRDQ------FLRDHPCVSQKS---------LEDFIKLLVEALGGGANPE 122

  Fly   122 DGWDGDEDLRKSQWTFAGSLFYSIIVITTIGYGHISPRTDWGKVTTIFYAIVGIPLMLICLSNIG 186
            ..|....: ..|.|....:.|:|..:|||||||:|...||.|::..||||:|||||..:.|:.:|
Mouse   123 TSWTNSSN-HSSAWNLGSAFFFSGTIITTIGYGNIVLHTDAGRLFCIFYALVGIPLFGMLLAGVG 186

  Fly   187 DVMATSFR---------FLYWRICCYVCTRTAKRPRNARSRQRSMRSQRHARSQPPPSFRRSMKM 242
            |.:.:|.|         ||.|.:                                ||...||:  
Mouse   187 DRLGSSLRRGIGHIEAIFLKWHV--------------------------------PPGLVRSL-- 217

  Fly   243 TQRSGNDSG------------LGPSMGHAYSDP------------DLRTMGRGYDDREFGHRSSG 283
                   |.            |.|:...:|.:.            .|.|:|       ||....|
Mouse   218 -------SAVLFLLIGCLLFVLTPTFVFSYMESWSKLEAIYFVIVTLTTVG-------FGDYVPG 268

  Fly   284 GGRNRRQQQQQHLHHDPRQRHTIYGDGYETQTLNRSNRYSSRQRQRDRMRDRHTVERERYSRSHL 348
            .|..:.....|.|    .....::|..|....|.....:.....:|.|........:.......:
Mouse   269 DGTGQNSPAYQPL----VWFWILFGLAYFASVLTTIGNWLRAVSRRTRAEMGGLTAQAASWTGTV 329

  Fly   349 DAGSIEDFGDMQPPAKRAASV--------RSVRSPHNQESSKASRELHRLHSAPGRSRAKSVDPR 405
            .|...:..|...||.::...:        .:|..|..:..|.|..|.....|.|   .|.::|  
Mouse   330 TARVTQRTGPSAPPPEKEQPLLPSSLPAPPAVVEPAGRPGSPAPAEKVETPSPP---TASALD-- 389

  Fly   406 HVSSHYEDVDEDVVRKTPIIPNRYALDDFGGNRRQAAPRSQSMPRSAHQRQRQKDRERERSP 467
            :.|.:...:||.              .|....|..|.||:   ||...:....|...|.|.|
Mouse   390 YPSENLAFIDES--------------SDTQSERGCALPRA---PRGRRRPNPSKKPSRPRGP 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
galeneNP_612084.1 Ion_trans_2 <134..189 CDD:285168 26/54 (48%)
NESP55 341..586 CDD:115071 27/135 (20%)
Ion_trans <621..709 CDD:278921
Ion_trans_2 626..706 CDD:285168
Kcnk4XP_006526779.1 Ion_trans_2 <135..189 CDD:369572 26/53 (49%)
Ion_trans_2 227..305 CDD:369572 15/88 (17%)
SucB_Actino <327..>398 CDD:200219 14/75 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 66 1.000 Domainoid score I9871
eggNOG 1 0.900 - - E1_KOG1418
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 130 1.000 Inparanoid score I4619
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11003
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.960

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