DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment galene and kcnk18

DIOPT Version :9

Sequence 1:NP_612084.1 Gene:galene / 38133 FlyBaseID:FBgn0035192 Length:729 Species:Drosophila melanogaster
Sequence 2:XP_031761959.1 Gene:kcnk18 / 100486306 XenbaseID:XB-GENE-6257492 Length:429 Species:Xenopus tropicalis


Alignment Length:707 Identity:144/707 - (20%)
Similarity:220/707 - (31%) Gaps:341/707 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PQRGRCVAAICFSWKVLTCI---VSHVLLVLLVVSYCVGGAYLFQHLERPHELEVKRDIQNLRVN 80
            ||||:|      |||.|...   ..||.||..:|.|.:.||.:|..:|...|.|:.:..:.|   
 Frog    28 PQRGKC------SWKCLQAFWISFPHVCLVCSLVLYSILGALMFWFIEGSREKEISQFEEFL--- 83

  Fly    81 LTENIWLL----SDDAVVLRESDWMANVSKHLANFEKQILTAIKADGWDGDEDLRK--SQWTFAG 139
              |.:|::    |.|...:.::.....:.|.||  .:.|:|.::.: |     |:|  .||:|..
 Frog    84 --EKLWMIVQNSSIDNATISDNGSAPEIFKELA--REAIITDLQVE-W-----LQKPEEQWSFKS 138

  Fly   140 SLFYSIIVITTIGYGHISPRTDWGKVTTIFYAIVGIPLMLICLSNIGDVMATSFRFLYWRICCYV 204
            |||:...|.||:|||||.|.|.:||:..:.||.:||||||:.|:::||::|   |.|        
 Frog   139 SLFFCCTVFTTVGYGHICPVTMYGKLACMVYATLGIPLMLLLLADLGDILA---RLL-------- 192

  Fly   205 CTRTAKRPRNARSRQRSMRSQRHARSQPPPSFRRSMKMTQRSGNDSGLGPSMGHAYSDPDLRTMG 269
             :||.||...|.::                                                   
 Frog   193 -SRTYKRAVLACNK--------------------------------------------------- 205

  Fly   270 RGYDDREFGHRSSGGGRNRRQQQQQHLHHDPRQRHTIYGDGYETQTLNRSNRYSSRQRQRDRMRD 334
                                      |.|.|:                                 
 Frog   206 --------------------------LCHKPK--------------------------------- 211

  Fly   335 RHTVERERYSRSHLDAGSIEDFGDMQPPAKRAASVRSVRSPHNQESSKASRELHRLHSAPGRSRA 399
                                       |.|.::                   ||:.||..     
 Frog   212 ---------------------------PIKLSS-------------------LHKEHSGK----- 225

  Fly   400 KSVDPRHVSSHYEDVDEDVVRKTPIIPNRYALDDFGGNRRQAAPRSQSMPRSAHQRQRQKDRE-- 462
                    ||..:.:|..|..|.|:            |..:......|:.|...|.:.....|  
 Frog   226 --------SSLLKTMDSRVSMKEPL------------NITEVIKTQASVKRKYLQMRNIDIFELI 270

  Fly   463 --RERSPQPPPQSSYRQQHDRRAGSLGRQSSRYGNHLELPDYDAPPPGRDHRRDRRGHSQGRYED 525
              :|.....|.:||.:|:                 ....||.|..||                .|
 Frog   271 IVKENQKVLPLKSSLQQK-----------------SFSCPDLDLWPP----------------SD 302

  Fly   526 YVEESFDEGSLYGDNNYEDYPPERHHSRSREPKRNRRRERAERLPPSPRIMSPMGFPVQRQIRRR 590
            ...::||:                                                         
 Frog   303 SAMQNFDK--------------------------------------------------------- 310

  Fly   591 PSYDYDDDDSMYGDEYGDYGDLLPKDRPVPIWLCVFLVVSYILGGAVLFAYWE-NWSFLDSAYFC 654
                       .|:|. |:.|       |||.|.|.::|:||:.||.:...|| :|:.:|:.|||
 Frog   311 -----------IGEEL-DHLD-------VPIVLIVLVMVAYIMCGACILPLWEDDWTTIDAFYFC 356

  Fly   655 FITLTTIGFGDFVPAKGVKDESEQSIAYCSLYLLFGIALLAMSFNLVQEEFIANVKE 711
            |:|||||||||.:|      :........|.|.:.|:.::.|:|.|.|...::..|:
 Frog   357 FVTLTTIGFGDIIP------KHPNYFLLLSAYTVVGMVIVCMAFKLGQNRLVSFYKQ 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
galeneNP_612084.1 Ion_trans_2 <134..189 CDD:285168 29/54 (54%)
NESP55 341..586 CDD:115071 30/248 (12%)
Ion_trans <621..709 CDD:278921 33/88 (38%)
Ion_trans_2 626..706 CDD:285168 30/80 (38%)
kcnk18XP_031761959.1 Ion_trans_2 <131..>175 CDD:400301 21/43 (49%)
Ion_trans_2 327..402 CDD:400301 30/80 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 173 1.000 Inparanoid score I3972
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D542195at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11003
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2863
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.160

Return to query results.
Submit another query.