DRSC/TRiP Functional Genomics Resources

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Protein Alignment LysS and Lyzl4

DIOPT Version :9

Sequence 1:NP_476829.1 Gene:LysS / 38130 FlyBaseID:FBgn0004430 Length:140 Species:Drosophila melanogaster
Sequence 2:XP_006244185.3 Gene:Lyzl4 / 363168 RGDID:1308401 Length:265 Species:Rattus norvegicus


Alignment Length:130 Identity:43/130 - (33%)
Similarity:72/130 - (55%) Gaps:8/130 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKAFFALVLLAIAAPALAGRTLDRCSLAREMADLGVPRDQ---LDKWTCIAQHESDYRTWVVGPA 62
            |:.:..|:|::.....:....|.||.:|:::.|.|:...:   |:.|.|:|..||.:....|...
  Rat   121 MQLYLVLLLISYLLTPIGASILGRCVVAKKLYDGGLNYFEGYSLENWVCLAYFESKFNPSAVYEN 185

  Fly    63 NSDGSNDYGIFQINDLYWCQADGRFSYNECGLSCNALLTDDITNSVRCAQKVL-SQQGWSAWAVW 126
            :.|||..:|:|||.|..||. .|:   |.|.:||.|||..::.:::.||:|:: .:||..||.||
  Rat   186 SRDGSTGFGLFQIRDNEWCD-HGK---NLCSVSCTALLNPNLKDTIECAKKIVKGKQGMGAWPVW 246

  Fly   127  126
              Rat   247  246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LysSNP_476829.1 LYZ1 20..140 CDD:197612 40/111 (36%)
Lyzl4XP_006244185.3 LYZ_C 141..263 CDD:340383 40/110 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166347505
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2BPI7
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46733
OrthoDB 1 1.010 - - D1551203at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11407
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.860

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