DRSC/TRiP Functional Genomics Resources

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Protein Alignment LysB and Spaca3

DIOPT Version :10

Sequence 1:NP_523882.1 Gene:LysB / 38125 FlyBaseID:FBgn0004425 Length:140 Species:Drosophila melanogaster
Sequence 2:NP_001099290.1 Gene:Spaca3 / 287557 RGDID:1306684 Length:163 Species:Rattus norvegicus


Alignment Length:152 Identity:51/152 - (33%)
Similarity:75/152 - (49%) Gaps:24/152 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IVLVALA-----LAAPALGRTMDRCSLAREMSNLGVPRDQ---LARWACIAEHESSYRTGVVGPE 61
            |..:|||     |.|.:..:...||.||:.:.:.|:...:   ||.|.|:|.:.|.:.|..|..|
  Rat    17 ITWLALAYLLSCLLASSKAKVFSRCELAKVLHDFGLEGYRGYNLADWICLAYYTSGFNTDAVDHE 81

  Fly    62 NYNGSNDYGIFQINDYYWC--APPSGRFSYNECGLSCNALLTDDITHSVRCAQKVLSQ-QGWSAW 123
             .:||.:.|||||:...||  ..|:|.   |.|.:.|..||::|:..||.|..|:..: ||...|
  Rat    82 -ADGSTNNGIFQISSRKWCKNLAPNGP---NLCRIYCTDLLSNDLKDSVACVMKIAQEPQGLGYW 142

  Fly   124 STW-HYCSG-----WLPSIDDC 139
            .:| |:|.|     |   :|.|
  Rat   143 ESWKHHCQGRDLSDW---VDGC 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LysBNP_523882.1 LYZ_C_invert 19..139 CDD:381618 44/131 (34%)
Spaca3NP_001099290.1 LYZ_C 36..161 CDD:340383 44/131 (34%)

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