DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trh and pah

DIOPT Version :9

Sequence 1:NP_612080.1 Gene:Trh / 38121 FlyBaseID:FBgn0035187 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_956845.1 Gene:pah / 378962 ZFINID:ZDB-GENE-031006-2 Length:449 Species:Danio rerio


Alignment Length:434 Identity:240/434 - (55%)
Similarity:306/434 - (70%) Gaps:21/434 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 ISIIFTLRNQVGNLARALQVFQELGINVLHLELSPLEMATNQADVLVDV-ECDQRRLDQVVKMLN 142
            :|.||:|:.:||.|..||::|:|.|||:.|:|..|......:.:..:.| :...:.||::|..|.
Zfish    33 VSCIFSLKEEVGALVEALKLFEEKGINLTHIESRPSRKNNEEYEFFISVDQASSKVLDEIVDGLR 97

  Fly   143 REV-ASVNYTSVNTQGLARAPSLSACSSFDFGDMV-WFPRKISDLDK-AQNVLMYGSELDADHPG 204
            .:: ..|:..|.|.|                .|.| |||..|.|||: |..:|.|||||||||||
Zfish    98 TQIRGQVHELSRNKQ----------------KDTVPWFPNDIQDLDRFANQILSYGSELDADHPG 146

  Fly   205 FKDPVYRKRREQFSAIANNFKHGNPIPRVQYTPEEVKTWGTVFLELHRLYVLHAVPEYMDNWPEL 269
            |.|.|||.||::|:.||.|::||.|||||:||.||..||||||.||..||..||..|:...:|.|
Zfish   147 FTDTVYRARRKEFADIAYNYRHGQPIPRVEYTAEEKATWGTVFRELKTLYPTHACREHNRVFPLL 211

  Fly   270 EKYCGYREDNVPQLQDVSVYLKRKTGFQLRPVAGYLSPRDFLSGLAFRVFHCTQYIRHSSDPFYT 334
            ||||||||||:|||:|:|.||:..|||:||||||.||.||||:||||||||.||||||||.|.||
Zfish   212 EKYCGYREDNIPQLEDISHYLQSCTGFRLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHSSKPMYT 276

  Fly   335 PEPDCCHELLGHMPLLANSSFAQFSQEIGLASLGASDADIEKLATLYFFTVEFGLCKQADSTFKV 399
            ||||.|||||||:||.|:.:|||||||||||||||.|..||||||:|:||||||||||.:.. |.
Zfish   277 PEPDICHELLGHVPLFADPNFAQFSQEIGLASLGAPDEFIEKLATVYWFTVEFGLCKQGNEV-KA 340

  Fly   400 YGAGLLSSVAELQHAITAENKIKKFDPEVTCQQECIITSYQNAYYYTDSFEEAKEQMRAFAESIQ 464
            ||||||||..|||:.:|.|.|::.|:||.||||:..||.:|..|:..:|||:|||::|.||.:|.
Zfish   341 YGAGLLSSFGELQYCLTNEPKLQPFEPEKTCQQKYPITEFQPVYFVAESFEDAKEKVRRFATTIP 405

  Fly   465 RPFGVRYNPYTMSVEVLSNAKKITAVVSELRGDLSIVCSALRKI 508
            |||.||||.||..:|:|.||:::..:...:.|::||:|:||||:
Zfish   406 RPFSVRYNAYTQRIEMLDNAQQLKNLADSINGEISILCNALRKM 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrhNP_612080.1 Trp_5_monoox 34..509 CDD:130337 240/434 (55%)
ACT_TPH 79..152 CDD:153201 23/74 (31%)
Biopterin_H 177..506 CDD:278766 209/329 (64%)
pahNP_956845.1 ACT_PAH 19..108 CDD:153203 23/74 (31%)
Phe4hydrox_tetr 20..449 CDD:130335 239/432 (55%)
Biopterin_H 117..447 CDD:278766 209/330 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3186
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54212
OrthoDB 1 1.010 - - D361696at33208
OrthoFinder 1 1.000 - - FOG0000587
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100921
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.730

Return to query results.
Submit another query.