DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trh and tph1a

DIOPT Version :9

Sequence 1:NP_612080.1 Gene:Trh / 38121 FlyBaseID:FBgn0035187 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_840091.2 Gene:tph1a / 352943 ZFINID:ZDB-GENE-030317-1 Length:483 Species:Danio rerio


Alignment Length:444 Identity:253/444 - (56%)
Similarity:337/444 - (75%) Gaps:11/444 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 QDNGRQHSPGERISIIFTLRNQVGNLARALQVFQELGINVLHLELSPLEMATNQADVLVDVECDQ 131
            :||..:.|...|.:::|:|:|:||.|.:||::|||..:|::|:|....:...::.::.||.:.::
Zfish    45 KDNKTESSETGRAAVVFSLKNEVGGLVKALKLFQENHVNLVHIESRKSKRRNSEFEIFVDCDSNR 109

  Fly   132 RRLDQVVKMLNREVASVNYTSVNTQGLARAPSLSACSSFDFGDMVWFPRKISDLDKAQN-VLMYG 195
            .:|.:::::|.:.|..|...:.:.    |.|..|     :..::.|||:|||||||..| |||||
Zfish   110 EQLHEIIQLLRKHVNVVEMDAPDN----RLPEES-----EMENVPWFPKKISDLDKCANRVLMYG 165

  Fly   196 SELDADHPGFKDPVYRKRREQFSAIANNFKHGNPIPRVQYTPEEVKTWGTVFLELHRLYVLHAVP 260
            |:||||||||||.||||||:.|:.:|.::|||:||||:::|.|||||||.||.||::||..||..
Zfish   166 SDLDADHPGFKDNVYRKRRKYFADLAMSYKHGDPIPRIEFTEEEVKTWGVVFRELNKLYPSHACR 230

  Fly   261 EYMDNWPELEKYCGYREDNVPQLQDVSVYLKRKTGFQLRPVAGYLSPRDFLSGLAFRVFHCTQYI 325
            ||:.|.|.|.|:|..||||:|||:|||.:||.:|||.:|||||||||||||:||||||||||||:
Zfish   231 EYLKNLPLLIKHCDSREDNIPQLEDVSRFLKERTGFTIRPVAGYLSPRDFLAGLAFRVFHCTQYV 295

  Fly   326 RHSSDPFYTPEPDCCHELLGHMPLLANSSFAQFSQEIGLASLGASDADIEKLATLYFFTVEFGLC 390
            ||||||.||||||.|||||||:||||..||||||||||||||||||..|:||||.||||||||||
Zfish   296 RHSSDPLYTPEPDTCHELLGHVPLLAEPSFAQFSQEIGLASLGASDDSIQKLATCYFFTVEFGLC 360

  Fly   391 KQADSTFKVYGAGLLSSVAELQHAITAENKIKKFDPEVTCQQECIITSYQNAYYYTDSFEEAKEQ 455
            || :...:.||||||||::||:||::...:|..|||.|||:||||||::|:.|:.:|||||||.:
Zfish   361 KQ-EGKLRAYGAGLLSSISELKHALSGNARILPFDPNVTCKQECIITTFQDVYFMSDSFEEAKVK 424

  Fly   456 MRAFAESIQRPFGVRYNPYTMSVEVLSNAKKITAVVSELRGDLSIVCSALRKIS 509
            ||.||::|:|||.|||||||.||:||.:...|..||.|||.:|.|:..||.:::
Zfish   425 MREFAKTIKRPFSVRYNPYTQSVDVLKDTTSINNVVEELRHELDIIGDALSRLN 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrhNP_612080.1 Trp_5_monoox 34..509 CDD:130337 253/442 (57%)
ACT_TPH 79..152 CDD:153201 20/72 (28%)
Biopterin_H 177..506 CDD:278766 225/329 (68%)
tph1aNP_840091.2 Trp_5_monoox 50..478 CDD:130337 251/437 (57%)
ACT_TPH 57..130 CDD:153201 20/72 (28%)
Biopterin_H 145..475 CDD:278766 225/330 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581370
Domainoid 1 1.000 472 1.000 Domainoid score I424
eggNOG 1 0.900 - - E1_COG3186
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H121565
Inparanoid 1 1.050 520 1.000 Inparanoid score I1225
OMA 1 1.010 - - QHG54212
OrthoDB 1 1.010 - - D361696at33208
OrthoFinder 1 1.000 - - FOG0000587
OrthoInspector 1 1.000 - - otm24815
orthoMCL 1 0.900 - - OOG6_100921
Panther 1 1.100 - - O PTHR11473
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3230
SonicParanoid 1 1.000 - - X2372
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1716.800

Return to query results.
Submit another query.