DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trh and Pah

DIOPT Version :9

Sequence 1:NP_612080.1 Gene:Trh / 38121 FlyBaseID:FBgn0035187 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_032803.2 Gene:Pah / 18478 MGIID:97473 Length:453 Species:Mus musculus


Alignment Length:449 Identity:234/449 - (52%)
Similarity:309/449 - (68%) Gaps:26/449 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 QDNGRQHSPGERISIIFTLRNQVGNLARALQVFQELGINVLHLELSPLEMATNQADVLVDVECDQ 131
            :||..|:.   .:|:||:|:.:||.||:.|::|:|..||:.|:|..|..:..::.:....:  |:
Mouse    26 EDNSNQNG---AVSLIFSLKEEVGALAKVLRLFEENEINLTHIESRPSRLNKDEYEFFTYL--DK 85

  Fly   132 RR---LDQVVKMLNREV-ASVNYTSVNTQGLARAPSLSACSSFDFGDMVWFPRKISDLDK-AQNV 191
            |.   |..::|.|..:: |:|:..|.:.:.               ..:.||||.|.:||: |..:
Mouse    86 RSKPVLGSIIKSLRNDIGATVHELSRDKEK---------------NTVPWFPRTIQELDRFANQI 135

  Fly   192 LMYGSELDADHPGFKDPVYRKRREQFSAIANNFKHGNPIPRVQYTPEEVKTWGTVFLELHRLYVL 256
            |.||:|||||||||||||||.||:||:.||.|::||.|||||:||.||.|||||||..|..||..
Mouse   136 LSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRVEYTEEERKTWGTVFRTLKALYKT 200

  Fly   257 HAVPEYMDNWPELEKYCGYREDNVPQLQDVSVYLKRKTGFQLRPVAGYLSPRDFLSGLAFRVFHC 321
            ||..|:...:|.||||||:||||:|||:|||.:|:..|||:||||||.||.||||.|||||||||
Mouse   201 HACYEHNHIFPLLEKYCGFREDNIPQLEDVSQFLQTCTGFRLRPVAGLLSSRDFLGGLAFRVFHC 265

  Fly   322 TQYIRHSSDPFYTPEPDCCHELLGHMPLLANSSFAQFSQEIGLASLGASDADIEKLATLYFFTVE 386
            ||||||.|.|.||||||.|||||||:||.::.||||||||||||||||.|..||||||:|:||||
Mouse   266 TQYIRHGSKPMYTPEPDICHELLGHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVE 330

  Fly   387 FGLCKQADSTFKVYGAGLLSSVAELQHAITAENKIKKFDPEVTCQQECIITSYQNAYYYTDSFEE 451
            |||||:.|| .|.||||||||..|||:.::.:.|:...:.|.|..||..:|.:|..||..:||.:
Mouse   331 FGLCKEGDS-IKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTACQEYTVTEFQPLYYVAESFND 394

  Fly   452 AKEQMRAFAESIQRPFGVRYNPYTMSVEVLSNAKKITAVVSELRGDLSIVCSALRKISA 510
            |||::|.||.:|.|||.|||:|||..||||.|.:::..:...:..::.|:|.||:||.:
Mouse   395 AKEKVRTFAATIPRPFSVRYDPYTQRVEVLDNTQQLKILADSINSEVGILCHALQKIKS 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrhNP_612080.1 Trp_5_monoox 34..509 CDD:130337 233/446 (52%)
ACT_TPH 79..152 CDD:153201 23/76 (30%)
Biopterin_H 177..506 CDD:278766 204/329 (62%)
PahNP_032803.2 Phe4hydrox_tetr 20..452 CDD:130335 233/446 (52%)
ACT_PAH 21..110 CDD:153203 26/88 (30%)
Biopterin_H 119..449 CDD:278766 204/330 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3186
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54212
OrthoDB 1 1.010 - - D361696at33208
OrthoFinder 1 1.000 - - FOG0000587
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100921
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.730

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